YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29286
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.97
Transmembrane Helix	52	71	0.92
Non-Cytoplasmic	72	108	0.93
Transmembrane Helix	109	128	0.94
Cytoplasmic	129	135	0.84
Transmembrane Helix	136	156	0.92
Non-Cytoplasmic	157	162	0.72
Transmembrane Helix	163	186	0.82
Cytoplasmic	187	200	0.75
Transmembrane Helix	201	220	0.86
Non-Cytoplasmic	221	230	0.68
Transmembrane Helix	231	251	0.93
Cytoplasmic	252	294	0.96
Transmembrane Helix	295	318	0.86
Non-Cytoplasmic	319	334	0.82
Transmembrane Helix	335	358	0.78
Cytoplasmic	359	369	0.92
Transmembrane Helix	370	391	0.91
Non-Cytoplasmic	392	396	0.82
Transmembrane Helix	397	418	0.80
Cytoplasmic	419	427	0.65
Transmembrane Helix	428	451	0.87
Non-Cytoplasmic	452	465	0.78
Transmembrane Helix	466	487	0.92
Cytoplasmic	488	527	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLMKNAVK INYDDAAKSP DQLLRSMSSV HPISDGIPSQ QRPLTYRWFP SWRFMTSIML  60
   61 CFCFGCVHLM NSNMGMAIVC MVNSSATYDN ETYPENAAPL LDWSSDEQGY IFSAFNAGLL 120
  121 VMLFTGGMAD KFNAKYMILV SVAIASLANF TLPWMAPISV YWAIFSRFLV GFADALLQPA 180
  181 MNSLITRWFP TSERSYALGL ATGGRQIGTL IIIPAAGALC SQTEIFGGWP SIFYLSGFIG 240
  241 VLFIFSYIFL GADKPSKQSC ISDNELKFIT ISNQSEDVGK KRTERKVPWK NILKSGAVWA 300
  301 SVISLVCHEF PLMTLIMFLP SYLHDVHHYH STENGILSAL PTVSLWFAKI GSSYLNTWLQ 360
  361 KNTTWKKDTI CKVLNSIGSI GLGVFLLAAT FLDNEHAWMA VLFLCLSMAS AGLHTPGCQL 420
  421 ALVSVAPAYS GAVTGFTFFF VAVSGIIHPI ITKMIVKDRT AAEWNLVFYI STVIAIFPII 480
  481 IFNVWGSTEV QWWAKSKASM QQEPNNKKMS KSSKASSSPS IDSIDMA