YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	30	0.81
Non-Cytoplasmic	31	38	0.76
Transmembrane Helix	39	57	0.87
Cytoplasmic	58	67	0.75
Transmembrane Helix	68	91	0.89
Non-Cytoplasmic	92	101	0.74
Transmembrane Helix	102	124	0.86
Cytoplasmic	125	131	0.83
Transmembrane Helix	132	155	0.79
Non-Cytoplasmic	156	173	0.79
Transmembrane Helix	174	196	0.91
Cytoplasmic	197	203	0.73
Transmembrane Helix	204	223	0.81
Non-Cytoplasmic	224	227	0.69
Transmembrane Helix	228	247	0.87
Cytoplasmic	248	264	0.82
Transmembrane Helix	265	284	0.86
Non-Cytoplasmic	285	291	0.74
Transmembrane Helix	292	316	0.88
Cytoplasmic	317	333	0.86
Transmembrane Helix	334	353	0.90
Non-Cytoplasmic	354	358	0.76
Transmembrane Helix	359	382	0.86
Cytoplasmic	383	606	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPISKWCPD SSLLIIVGLA LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA  60
   61 LFENFDSVLV FSVFGTIWNT FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV 120
  121 IAVFEEIHVN EFLFINVFGE ALFNDGVTVV LYQMFKSFAL IGSENLSVLD YATGGLSFFV 180
  181 VALGGAAVGI IFAIAASLTT KYTYDVRILA PVFIFVLPYM AYLTAEMVSL SSIIAIAICG 240
  241 MLMKQYIKGN VTQAAANSVK YFTKMLAQSS ETVIFMFLGL STISSQHHFD LYFICATLFF 300
  301 CLIYRAIGIV VQCYILNRFR AKKFEMVDQF IMSYGGLRGA IAYGLVVSIP ASITAKPMFI 360
  361 TATIAVIYFT VFLQGITIRP LVNFLKIKKK EERDPTMVES VYNKYLDYMM SGVEDIAGQK 420
  421 GHYTFIENFE RFNAKVIKPV LMRHQKRESF DASSIVRAYE KITLEDAIKL AKVKNNIQNK 480
  481 RLERIKSKGR VAPILPDKIS NQKTMTPKDL QLKRFMESGE NIDSLYTLFS DLLDRKLHEM 540
  541 NRPSVQITDV DGQDDIQDDY MAEGSRSNLS AMFRSTEQLP SETPFHSGRR QSTGDLNATR 600
  601 RADFNV