YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhr-80
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAEASSSST RCLICSAQAT GFHFEAQSCS ACAAFFRRTV ALTKSFKCIT GRDDCNVHYS  60
   61 MHQICRSCRH KKCLSNGMKP GGVQPKKPNI ETGRAFFTKS GLKRNKKFAN VSPQTADEQK 120
  121 LVVEGVKVPK IEVQEPNSLE DLEQDNEFVI KTPTPRKISS STSFSASTTT NYSTPGPSPM 180
  181 APCSAGPDVL TLFIREEMKL GERRRLLFSE RAVGTLLGQN KHCPYKKEDI KPLVFHDFRL 240
  241 TIKTHIMLVY EWLQTWPELQ ELDDFDRMSL LRKAVLIHFL LDPSFLSYQI GEPDKLIMQN 300
  301 GGFISTADHH GVGWEDETDI SGENKRKYYV PIMKQITDEI MPAMEAMKIT FEEFVALKAL 360
  361 ACFQGGFENV SEAKRHLITQ QVNRIMTSLH THYLENSEEK IAERFGTIVL MLSNIFTAGN 420
  421 DFVQNHREID IFHIWDLDKL VLQLLNLDKI METEARETAE KRAMRNGINV VNNNNDVLLG 480
  481 QAKLEK

Type	Start	End	Confidence
Signal Peptide	1	19	0.73
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	486	0.98