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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vab-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.69
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLYNSRILN PHQSIFILVL QCLITIVTSH QEVLFDLSKV GSDLKWDQVS LRHDRDDVWM  60
   61 EETWRNPAAT DEKHANQRAY VTCNYDMINP SNWLFSHFIE VKTARRIYIE LLFNTRDCDA 120
  121 YLNPKSCKET FSVYLKQFKT SRPGSTKIEK ERFSEDIDNW KNIGRLARSN SNMTTETLGM 180
  181 EIDSDTKTIR IAFEEQGICL SLLNVKIYYR ICDEFTDQLV YFRPQVTGPK ETDMVRMNGS 240
  241 CIPNASKKIP GVDLIGLCMS TGSGIKTSGE CVCDSGYSQI ADSNGARCES CPTNTYKPKG 300
  301 QSLCKSCPSN SISSEAASSC RCLNGYFRAE DELISMPCTQ PPSRPIKLVA NAITATSTRL 360
  361 SWNEPSSLGG RPEIWYEVKC SGRGECGTVV MTPGDKKLST RSVQINGLRP SSDYTFLVFA 420
  421 KNKVSAQFPE FSEKNAVIDI RTRSEEEDVP PVSHLRVDAS QSDGITIAWS VSDSDVSDFE 480
  481 VEVRPAIVKK RTFETRHVNM TYTTFIGLNP ETVYQFRVRI RDDLRWSQPI SYQLGRGLMS 540
  541 SPSSNEVEES QFLNQTGSAL LIIIALILIV IAVALCMIVV QKKSKNRKQM SDLDVLDTYK 600
  601 QDSMTPDYHT TSRHHHHQGN LPATLHEQLR STTKLNAPLI PSFGSPISQP PPYYGGVHPN 660
  661 SGKYKTYVDP TTYEDPYQAL IEFTFDISPN DVFITQVIGG GEFGDVCLGG LSKNSPAAAK 720
  721 WSVSNTTMGR GGGGGGYESE PYETVAIKTL KSGSSAKAKA EFLTEATIMG QFSHPNVIRL 780
  781 IGVVTSAEPV MIVAEYMANG SLDQFLRNTD QRGEKVHWEK ITEMLYGIAS GMKYLTDMGY 840
  841 VHRVSFLRDL AARNVLLDME LRCKIADFGL SRGVRSEGSS VEPEYTTNGG KIPVRWTAPE 900
  901 AITHRKFTPS SDVWSFGVVI WEVCSFGERP YWDWTNQKVI SEVMIGYRLP PPMDCPMGLY 960
  961 RIAQWCWKME RHERPTFTQL LATFHKYILQ PTLIEHDPGE LPRRVQSQSA LNTYGSVNVG1020
 1021 VVPTPPSSAA PMPSLDDFLR QIGLNHVYGQ LVSNNIHSVS DLANTSHLDL LAYGLMSAEC1080
 1081 STVRDGLNGR ISGSPPGSSG TIHATTRGTR TTRPPREEGF FV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle