YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ctns-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPVAFLLV LFLVPFTFAT NNLVVRQKEL EIVIGGEVSV NFQIKNHTSQ SLNATRISLS  60
   61 QSPYISHPDA ILVDNWNANV TVLGSQLVSG AILEALNCTT DGSITCPLDL EDAFARITVI 120
  121 RSHFLAILIQ IVGWTYFFAW SISFYPQMYL NFKRKSVVGL NFDFLSLNLV GFCAYAIFNL 180
  181 LMYYNSHVKN EYNIVNPRSP PPVLLNDVVF AVHAFLACFI TILQCLFYER DNQSVSSKCI 240
  241 ALMIVLISFG FCSAAATVLR KIQLLSFVTS LSYIKMAVTC CKYFPQAYFN YTRKSTVGWS 300
  301 IGNIMLDFTG GTLDILQMIL QAVNVNDWSA FYANPVKFGL GFVSIFFDII FMVQHYVLYP 360
  361 NAEVPHNEYH GVDNPNPDNI ARDAEQYAGD SESMESTEPI IVHD

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	123	0.99
Transmembrane Helix	124	144	0.91
Cytoplasmic	145	158	0.83
Transmembrane Helix	159	178	0.91
Non-Cytoplasmic	179	208	0.86
Transmembrane Helix	209	228	0.95
Cytoplasmic	229	238	0.88
Transmembrane Helix	239	259	0.94
Non-Cytoplasmic	260	337	0.58
Transmembrane Helix	338	358	0.67
Cytoplasmic	359	404	0.54