YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28452
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEFVSEEE SKYADSPMRL QGSSASSASV ASRLYGTRSR RDSLGGSSSE SDLIAFGGDQ  60
   61 DALNDFSSQM NQLNSFTKRY SELEERNMSL SDERTRLKTE NSVLKERMHN LEEQLTDNED 120
  121 RFKQLLSDEK ARGTESMSRL KREKELETES WNLKYQMLEK DLISVKKDAE RSNEETKRIR 180
  181 NELEKTENKL EEAQLLVEGM EEERIQLERQ FRKFKEEAQQ DIDSSSEMVE VLALETEELR 240
  241 RKVDGPRSES ISDREDMHEE IEILKAKVAE LMKEKEEMTD QLLATSVERG RSLIADTPSL 300
  301 ADELAGGDSS QLLDALREQE ICNQKLRVYI NGILMRVIER HPEILEIGEE GILSKLTVRR 360
  361 RISVLANVVV IIDSRRVIIT DTFSKNLRLP SLIVSSMGMN RHMTSSTIGT QFLVTWHATF 420
  421 SLFFSFLHPC DFQNALLQMF LCTISSFLVP FTPSNSIFEL RATSQIDPVN G

Type	Start	End	Confidence
Cytoplasmic	1	406	0.51
Transmembrane Helix	407	427	0.70
Non-Cytoplasmic	428	434	0.64
Transmembrane Helix	435	454	0.73
Cytoplasmic	455	471	0.56