YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-3
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKIWLFSII TIFLITELQC YPNSAEERLL SYIFDGYNSL IRPVLNASSP PIEVFFSLAF  60
   61 VLLINVDEKN QIMQTNVWPT MKWNDYQMQW DPREFDGIKT IRVPPDKVWL PDIVLFNNAD 120
  121 GNYLVSFYSN VVVEHTGDML WVPPAVYKSS CLIDVEFFPF DEQVCSLTFG SWTFRKDELQ 180
  181 LSYLSGKRHV ELNDYLPSGV WDLIDAPGLL IDERSKISYQ IKIRRKALFY TVILIMPTVL 240
  241 MAFLSMMVFY LPAESSEKIT LAISILLALV VFLLVVSKIL PPTSSTIPLM AKYLLMTFIM 300
  301 NMITIMVSVI IINVYFRGPA THIMPNWVKT VFLKFLPVLF VMRRPESTEK ELAKMKREKR 360
  361 ERRSMKSALK TFFKRNDAKI SEQPKQTSRK DGSSSEEKLS SDAKKAIEAI EYITTHLTHD 420
  421 NAFKRQREEW KFVSVVIDRL LLYLFFAVTT GGTVGILLSA PNVFEQVNQT SVIERLKQQA 480
  481 AEEMLNS

Type	Start	End	Confidence
Cytoplasmic	1	226	0.58
Transmembrane Helix	227	251	0.91
Non-Cytoplasmic	252	258	0.57
Transmembrane Helix	259	280	0.92
Cytoplasmic	281	292	0.56
Transmembrane Helix	293	316	0.89
Non-Cytoplasmic	317	322	0.53
Transmembrane Helix	323	342	0.53
Cytoplasmic	343	439	0.95
Transmembrane Helix	440	460	0.91
Non-Cytoplasmic	461	487	0.92