YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNEPPVL GAGQQIGTRL KGWFFGAAML LSAFFGVLYI VTPLVVLLFL KPRLWRQMLD  60
   61 RLVGIWVIMP GALCNYIFGA NIRIKGDFIN HEEPALIIMN HRTRLDWLFF WNALYKMDPW 120
  121 LCTTEKISLK GMLKYVPGAG WAMQAASYIF LDRSFDTDKT KLDNILNYYA ETEYKYQLLL 180
  181 FPEGTDKCPK ATERSRIHSE KKGLVHYQYV LHPRVTGFVH IVQAMRRANN IKYIYDVSIG 240
  241 FGDAIVQSEL DIFAHGVCPK EVFYQVIKYP IEAIPQTDEA LGQWLVNLWR NKEEKLKRFY 300
  301 EMPRNVRQFP DTPDGVEYEL DNNTDRAQKG LIGFWCFTTV FWMFMFFESA FMFYWAIIAC 360
  361 VFYAAVHKFY GGLEFLAIDR FNHSKQYGVV GQEPEVLNT

Type	Start	End	Confidence
Cytoplasmic	1	21	0.72
Transmembrane Helix	22	46	0.85
Non-Cytoplasmic	47	61	0.63
Transmembrane Helix	62	80	0.89
Cytoplasmic	81	330	0.85
Transmembrane Helix	331	346	0.77
Non-Cytoplasmic	347	350	0.51
Transmembrane Helix	351	371	0.80
Cytoplasmic	372	399	0.66