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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: itr-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDYRRRVL ERNIGMALPS RKLTIANSID HGNNGNLHIG DIISLYTESS SNQEQRGFLS  60
   61 TLGLVDDRCI VELKDGRPES PPKKFRDCLF KVCPVNRYAA QKHLWTEQKR FQTGDSMFDD 120
  121 DLMNKLKVAA DKEREENESE FQKTLGNVIQ YGSMVQLLHV KSNKYITVQK NSPAKRERNA 180
  181 MKVYLDRAGN EGSWFIIEPA YKHYAIGDNV SAGNKISLIP NSVSTTQAGH VKSQLHLSSF 240
  241 NLLDHQSAAE VNCLNEPTEW QVFMFLLFDE NQQNSVKSGD VVRLFHADQQ TFLTLDTIPK 300
  301 QNPPTDVVFL RMTNRPSAAD ATSSRALWEV QVVQTNAYRG GTAKWNKAYR FKHLATDMYL 360
  361 SAEPSQVQVK PAMNGRRASL IYSKTNNPMA MYSDGPNGVT NESTDTTQQN IPSVWVLGPT 420
  421 KSEFPEEDAN LLFQLDPSTF MKSNKEVPRR SYVRLLHQSS DKWVHATNAT EKQNLHYSSK 480
  481 NEKGWVKVIC EKNRVDKETF ALLPVNPDEV RDLDFANDAC KALRNFIKLI KIGQVISKES 540
  541 INSTTQLLID CILFVTNSSD HLADPLKISD FSPSRDRQKL LREQEVLNQV FLLLKAPFLP 600
  601 RQGTTELGPL LSSPSELSDS RNEIFKTMFQ LCYCLLKYSQ VSYRKNQEFL AEKFGEIQEQ 660
  661 IGFDLMAEDT MTAVLHNNPK LLEKYVKTPH VERFVELVRN NRQGKFLDYL ADLCVCRGEA 720
  721 NKKIQELICT SVLSSKHRDI FMDTKIIDGE IEVGWAPNFR KLVDIAEGAK SNSDDAEHLD 780
  781 YYRHQLDLLS QMCQEQQYLA IDPPPERRLM NISQQLPAEL VLQCMSDNRL PYDLRGSFTR 840
  841 LMLHLHVVRG SPMSAIRHAR LWWSIPENVN VSTYESVSVE AYSDGSRMRI GEGIAHKVLA 900
  901 TVETYLMGLR NQSMEERQSV NSSKLTYEIV NLAKALAQFN FYSFNDLLQL TQNLLAIINE 960
  961 GPATEQVPSH RAMVNAIRNM SKSMMRGGNK ENSKDLAKTP SVTAEEAGRT KEGRALNVKT1020
 1021 KLIVAEILQF VMDVRRDYRI TMALSWFKNV FPCDEDGSLM HSASINERMA SELYDAIYRS1080
 1081 SGHELHLDGR DGQLLLAILL QMTMSDYPPL TSIALKVFFR HFTQYQELLE DLKQVQLLVS1140
 1141 NNDVENYRQI DRDLFILKNL TEKSELWVHG DRHHSIDTKE VDEKERTTEH DLLDHDLKSP1200
 1201 RAFDSGDSME ALMAVLNEHY PSIRNECLQL LNRLLIKDDR NDAAVALQEL SDKAPLIAYP1260
 1261 LIRQMLVRLT GMCYRKGDPK PDTMNQQLLK NMRVYEVVLE FISVPHDKKH DHDMMKLITL1320
 1321 SHEFLRSFCK TNKENQSRLY KFISYEKDAK EGMLRVETIE EVGTLVAIFR NNRELASNVP1380
 1381 EELIAHIVGL IEHNSRNPIF LELLQALVCV YDKEIESGQE KVANEICAAS DEVRQLYVDN1440
 1441 ASFEELEAMM KDEKESKGRS SDSRRKLKYH IELVRLLAMC TRGKNGNTEL KCASQIPMDH1500
 1501 IVRVVTAKQC LVEVKTVYLQ LLLHCYIDTD AEMKDAYKTE YVDHILNNLL EDIRSLRVEK1560
 1561 LTGAETATLE HYICHTVTEV LIKFFEAPYS ALQQAKVDVH HHKKTFSEVL LELTYLEKGK1620
 1621 LRGSKSSRNW YRVAECIKRL TKWAEEHNIT LPATLAGPQM SGQTSVRQKW QQAASSAKWI1680
 1681 GIGKRLNRQN TLNPGHRLYG TSNSMTEHTS ANVVTCYHMM IGEFKFYLHP LHAAEGSVLV1740
 1741 EVLHTPELLF PEGSALRDQC ARGGVVAKLI QHCKTLMQNK QDNLCARVLQ TLCKMCDCTK1800
 1801 QQLTHQGQQL RQLLLQRYFG HHNNHHPPLD RQQSKIGEVI EAVKEKKEET WSQERDLYAI1860
 1861 QCKLNDAGAS DLVTDIIIME PSREIFLKAI HLARALLHEG NDKVQHSFYM RMKQKDIHEP1920
 1921 FFKAILTRIQ TAQNRLKSDM MSCSDSKPKV SLSATVSRRS STVLTPLIDA GDTGFNGALF1980
 1981 EVPQQVRHPS ISEMSQLSND LTHSIPDLAP YQDEEKSTDA LPPEVALVEP ILRVLQLLCE2040
 2041 NHNSLLQNFL RKQSDRTNHN LVSETLSFLD TVCGSTKGSL GVFGEIGEHN FSLITQTLAT2100
 2101 LTEFCQGPCH ENQNTMAMQE NGLNIIISLV LNEIKPLADD HMELALEIKS QASKLLLAIM2160
 2161 ESRHDGENAN RVLRNMANMS GGPKQLVHAI KQAYEMTNSN HHMLKSISRD LFRQAEDDLK2220
 2221 KKSGPQITVN TVTLPEINVD ASGIVSIHTE KNISSSLDDK FNDDDIPSVD PREVGHNIYI2280
 2281 LAHQLAIHDG ELEIWLDGSD EKKDDLTREA LNYYKERTAQ IEIVRRDRTL ERVVFPINDI2340
 2341 CSYLTKDTKD YVYNNTERDN QGSKVTEFFD EWETMYHEMI WQRKLQDRKW LSWCAFRLPL2400
 2401 WTRLSFHFAF IVNALVARYY PLPEHSNSSI SLGNLYSWFA VFSSFLLAHY LRHDKIYLHK2460
 2461 TSLLILASLC FLLLSSIGVT LTLYIFGILQ LVNKIVHVVA FVSNKGLEDR PIAEILACRN2520
 2521 LHYLLVYLFI CILGLLVHPM IYCILLFDII FTEETLQNVI ASVTRNYQSI VWTGLLALIL2580
 2581 LYFFSILGFL YFRHDFYLEV DPVENDSSAT ISSGIPSETC PSEGCPGLQP SEKDDNDDEK2640
 2641 KVKSCETLWM CILQTGYQGL RNGGGIGDVL RNPAPWEDMF IWRVAYDMTF FVVLIVIVLN2700
 2701 LIFGVIIDTF GDLRAEKNEK EQILKNNCFI CGLDRSRFDN RSVTFETHRE TEHNIWHYLY2760
 2761 YIVMLQIKDE TEFTGPESYV AQCVKDRNLD WFPRMQALSL QDSELDTDQS EVKQMKDQLL2820
 2821 QMMTLMREII SQNEESRAFM EQFQPR

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Created and Maintained by: Michael Riffle