YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glr-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRTLKMVV PAIEPPYVNY VNFSDAAVTD KGYGPGVVME ILKEIGKRLN LTYEILPALG  60
   61 STWGEYLNGS WTGAFGQLVR GEVDLLAGGA IMEYDRSVIA DLTYPFQFEP TGIMIRSPEK 120
  121 YEDDTLLIVT EPFSWEVWVI TAAVILISGV IFLVMTNIIR KVYEEMTVTP FESIWVFFSI 180
  181 FVQQGLPEQP RSWSCRVLVA LWWLASITLS ATFTGSLVAL FAVDKTNVPF QNIDQLVRLV 240
  241 KQGKFEIVMD ENSFTRTEMI ARSKLPVYRD LWHEMIVNHK VKYVNGIARG VAFVRANPGY 300
  301 ALLGPMATLN FYAYSDCKVI LFNDGILPVY LSIPLVKNSI YSPYFSTKIR EMVERGFTQK 360
  361 WIADYRSYVA MQKINECNST TIGPKSYLDL KRAQGAFWVF LGGAGLGLAL FVGEFIFKFF 420
  421 REKMTKHTKT TTVPPEVATV SANVAENSTS LDIPDEVLPS APLPSEDGNW SLRRRNILNL 480
  481 SLDLSNIAN

Type	Start	End	Confidence
Cytoplasmic	1	50	0.61
Transmembrane Helix	51	67	0.28
Non-Cytoplasmic	68	136	0.67
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	198	0.48
Transmembrane Helix	199	223	0.89
Non-Cytoplasmic	224	395	0.64
Transmembrane Helix	396	417	0.93
Cytoplasmic	418	489	0.69