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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clh-3
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGTKILSK IEKNKTSDGL TIPLTPTTQK QSSSWCSFES IKTFFRTVIR DWIFLALLGF  60
   61 IMASLSFGMD YAILNLQNGQ MRLFDLVKEY HFTLAYLVWV GYVVGLILLS AVCAHYIAPQ 120
  121 AIGSGIPEMK TILRGVILKE YLSVRTLLSK MIGLTLSLGS GLPMGKEGPF VHVASVVASQ 180
  181 LTRLVHGSSG GIFENESRSG EMLAAGCAVG VACTFSAPIG GVLFSIEVTS VYFAVRNYWR 240
  241 GFFAATCSAT LFRILRMFSV SAAVTVEAHY QTNFPPQNVF LPQELPIFAL IGLVCGLAGS 300
  301 IFVYLHRRTV LFLRRNWLAK MIFQKYWLIY PIFIATFISS LSFPLGLGKF MGGEERFSHT 360
  361 MKEFFVDCAW TAPPNDSYAC PMPTSNATSS DSFDIRHWKG DNYDYSPFVT LSSFQVVYFF 420
  421 LAILASTLPV PSGIFMPVFV LGAAFGRLVG EGVFSLDPYG HISGDIQFFV RPGVYAVVGA 480
  481 AAFCGAVTHT VSVAVIVFEL TGQLCHLLPV MIAVLIANAV ASYLQPSIYD SIIRIKNLPY 540
  541 LPDIPHTTSL YHQMLIEQFM ISPLVYIAKD STVGDIKRAL ETKTRIRAFP LVENMESLAL 600
  601 VGSVSRSQLQ RYVDSQIGTK ARFAEATRRI KQRLEDEESE RKRREESKSD DTEDSLETTG 660
  661 AGERRASRFL IVPVAKNGPQ VAKNETLTGL SEENARKILT VEEKQALFDA ASLATPKREM 720
  721 SGKTINPVHI ESHHTIGDIF RSITHLSFGR QNFPKKNNHN EFDLFGEERT EWEDMMLNQK 780
  781 LDLSQLDIDS TPFQLSEYTS LFKAHSLFSL LGLNRAYVTK KGQLIGVVAL KELRLAIEYL 840
  841 QSGKVPTPGM SIFNEPPTEQ SIYEKSARLE SGRATGDAQN AAFVTDNGED DAQNDYIQPP 900
  901 LEVVRRGALT PNRMSELTRL ENVRTTPESP HFEVSSPSTS SSCVSIDFSP LDAANSENGS 960
  961 VGGLVLNVPS LPTRARSANE LTRQNTHVQI NLPDDVHDEK F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle