YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ced-7
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	43	0.77
Non-Cytoplasmic	44	255	0.85
Transmembrane Helix	256	276	0.90
Cytoplasmic	277	285	0.70
Transmembrane Helix	286	306	0.65
Non-Cytoplasmic	307	308	0.42
Transmembrane Helix	309	328	0.79
Cytoplasmic	329	334	0.51
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	362	0.60
Transmembrane Helix	363	382	0.87
Cytoplasmic	383	390	0.60
Transmembrane Helix	391	411	0.82
Non-Cytoplasmic	412	432	0.63
Transmembrane Helix	433	456	0.88
Cytoplasmic	457	959	0.67
Transmembrane Helix	960	982	0.70
Non-Cytoplasmic	983	1123	0.89
Transmembrane Helix	1124	1146	0.93
Cytoplasmic	1147	1166	0.73
Transmembrane Helix	1167	1195	0.78
Non-Cytoplasmic	1196	1202	0.52
Transmembrane Helix	1203	1225	0.90
Cytoplasmic	1226	1234	0.62
Transmembrane Helix	1235	1257	0.94
Non-Cytoplasmic	1258	1265	0.65
Transmembrane Helix	1266	1292	0.80
Cytoplasmic	1293	1307	0.64
Transmembrane Helix	1308	1328	0.92
Non-Cytoplasmic	1329	1704	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLRQFSLL LWKDWVLLRR NKVWTLFELI IPCLLLGPLV YLVVKNADHT SSPENIYDNF  60
   61 QVKGTVEDVF LESNFIKPIY KRWCLRSDVV VGYTSKDAAA KRTVDDLMKK FAERFQSAKL 120
  121 KLSVKNESSE EQLLTVLRND LPMLNETFCA INSYAAGVVF DEVDVTNKKL NYRILLGKTP 180
  181 EETWHLTETS YNPYGPSSGR YSRIPSSPPY WTSAFLTFQH AIESSFLSSV QSGAPDLPIT 240
  241 LRGLPEPRYK TSSVSAFIDF FPFIWAFVTF INVIHITREI AAENHAVKPY LTAMGLSTFM 300
  301 FYAAHVVMAF LKFFVIFLCS IIPLTFVMEF VSPAALIVTV LMYGLGAVIF GAFVASFFNN 360
  361 TNSAIKAILV AWGAMIGISY KLRPELDQIS SCFLYGLNIN GAFALAVEAI SDYMRREREL 420
  421 NLTNMFNDSS LHFSLGWALV MMIVDILWMS IGALVVDHIR TSADFSLRTL FDFEAPEDDE 480
  481 NQTDGVTAQN TRINEQVRNR VRRSDMEIQM NPMASTSLNP PNADSDSLLE GSTEADGARD 540
  541 TARADIIVRN LVKIWSTTGE RAVDGLSLRA VRGQCSILLG HNGAGKSTTF SSIAGIIRPT 600
  601 NGRITICGYD VGNEPGETRR HIGMCPQYNP LYDQLTVSEH LKLVYGLKGA REKDFKQDMK 660
  661 RLLSDVKLDF KENEKAVNLS GGMKRKLCVC MALIGDSEVV LLDEPTAGMD PGARQDVQKL 720
  721 VEREKANRTI LLTTHYMDEA ERLGDWVFIM SHGKLVASGT NQYLKQKFGT GYLLTVVLDH 780
  781 NGDKRKMAVI LTDVCTHYVK EAERGEMHGQ QIEIILPEAR KKEFVPLFQA LEAIQDRNYR 840
  841 SNVFDNMPNT LKSQLATLEM RSFGLSLNTL EQVFITIGDK VDKAIASRQN SRISHNSRNA 900
  901 SEPSLKPAGY DTQSSTKSAD SYQKLMDSQA RGPEKSGVAK MVAQFISIMR KKFLYSRRNW 960
  961 AQLFTQVLIP IILLGLVGSL TTLKSNNTDQ FSVRSLTPSG IEPSKVVWRF ENGTIPEEAA1020
 1021 NFEKILRKSG GFEVLNYNTK NPLPNITKSL IGEMPPATIG MTMNSDNLEA LFNMRYYHVL1080
 1081 PTLISMINRA RLTGTVDAEI SSGVFLYSKS TSNSNLLPSQ LIDVLLAPML ILIFAMVTST1140
 1141 FVMFLIEERT CQFAHQQFLT GISPITFYSA SLIYDGILYS LICLIFLFMF LAFHWMYDHL1200
 1201 AIVILFWFLY FFSSVPFIYA VSFLFQSPSK ANVLLIIWQV VISGAALLAV FLIFMIFNID1260
 1261 EWLKSILVNI FMFLLPSYAF GSAIITINTY GMILPSEELM NWDHCGKNAW LMGTFGVCSF1320
 1321 ALFVLLQFKF VRRFLSQVWT VRRSSHNNVQ PMMGDLPVCE SVSEERERVH RVNSQNSALV1380
 1381 IKDLTKTFGR FTAVNELCLA VDQKECFGLL GVNGAGKTTT FNILTGQSFA SSGEAMIGGR1440
 1441 DVTELISIGY CPQFDALMLD LTGRESLEIL AQMHGFENYK AKAELILECV GMIAHADKLV1500
 1501 RFYSGGQKRK ISVGVALLAP TQMIILDEPT AGIDPKARRE VWELLLWCRE HSNSALMLTS1560
 1561 HSMDECEALC SRIAVLNRGS LIAIGSSQEL KSLYGNNYTM TLSLYEPNQR DMVVQLVQTR1620
 1621 LPNSVLKTTS TNKTLNLKWQ IPKEKEDCWS AKFEMVQALA KDLGVKDFIL AQSSLEETFL1680
 1681 RLAGLDEDQL DTHSTVEISH STHV