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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lin-18
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFISKEEMNR TFGVKAELNY IEMGNVSSYS TKFHYRVMAN IDYLSFTWNA VGIVHYEVYV  60
   61 ESDDSSVLPI VRIPLKGTVP ESLQDFTVEY RCAGHRSGQF AVSLYFTFKY GNKEPLKVKL 120
  121 RQEKICASRD GRRGLNGGYE GHEVDDTDSI DKAFFVIICI AAAFLLIVAA TLICYFKRSK 180
  181 KEDMIPTRLP TSFRNSLKST KSAQPFLLST PRDGPPTLSA ISSAPCSSSS ASGNSIIPSK 240
  241 PRNIDVRRAL LQLYQDRDAF QSLPLDMEGT FGEVRYAIWR QVDDVLNGDV DDEEDTFCNQ 300
  301 EAVYTKTLKN NASPIQLDRF LSDALLFYNI TPHQNLSQVA CVASFGRFDR PETVTDFPLV 360
  361 CYRHQGFGNL KKFLTICRHG DKTKGAQTLR THQLVSLATQ VSSAVAHIHK YRIVHNDIAA 420
  421 RNCLIAEVNG RLQVQLCDSA LSRDLFPADY HCLGDNENRP LKWMSPEAIA NELYSSAADV 480
  481 WSLGVLLWEL MSLGGSPHAE IDPEEVYTMI LKGKRLQQPN NCPDQLYEVM LCCWRVLSED 540
  541 RPSSEQVVHG LRDFNIQLSQ YI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle