YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27671
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	150	0.99
Transmembrane Helix	151	171	0.93
Non-Cytoplasmic	172	190	0.85
Transmembrane Helix	191	210	0.90
Cytoplasmic	211	217	0.72
Transmembrane Helix	218	236	0.95
Non-Cytoplasmic	237	242	0.86
Transmembrane Helix	243	264	0.84
Cytoplasmic	265	279	0.78
Transmembrane Helix	280	303	0.87
Non-Cytoplasmic	304	317	0.89
Transmembrane Helix	318	339	0.92
Cytoplasmic	340	374	0.97
Transmembrane Helix	375	396	0.91
Non-Cytoplasmic	397	410	0.88
Transmembrane Helix	411	433	0.93
Cytoplasmic	434	440	0.90
Transmembrane Helix	441	461	0.92
Non-Cytoplasmic	462	467	0.80
Transmembrane Helix	468	488	0.92
Cytoplasmic	489	503	0.79
Transmembrane Helix	504	524	0.90
Non-Cytoplasmic	525	531	0.69
Transmembrane Helix	532	552	0.93
Cytoplasmic	553	586	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKAQFIRD FILKGPVRRT VPIEPVEPST SGSIAWTSSE SGSAHSSRVS SSPITPRKSA  60
   61 ETEETLPTCL VRARGSSSAH SCSAATTSQQ SNRQSKEHRI GGIKKEEKPI EMGGGSSENG 120
  121 GANGCSNGDN HHVLLMEKQE KIEPKVFRKR WVILVIFMFL SGSNGAQWIQ YSIIANIISD 180
  181 YYKVSFQAVD WTSMIYMLTY ILFFIPAAWL LDKWGLRLSV LLGALGNCVG AWIKLLSTHP 240
  241 DSFWVTFVGQ TIVGASQMFT LGIPPRLAAV WFGPDEVSRA CALGVFGNQL GIAVGFVLPP 300
  301 LIVSNGSVEH VTYDLNTLFL GSAVLNTSIL ALVICFFTAR PAVPPSLAQV NALEEKTFDN 360
  361 NFWGTLRKLM TSRDFVILFI TYGINTGVFY AISTLLSQMV LSVYPNETET VGYVGLLIVV 420
  421 AGMAGSVVGG FILDKFKKFK LTTIMIYLFS FVGMLSFTLT IDLDSMVLVF INAALLGFFM 480
  481 TGYLPIGFEF AAEITYPAAE GTTSGLLNAS AQIFGIALTW LMGIVMHGFG TFTSNIIMSS 540
  541 CLVVGTILTC FIREDLKRQK AHSVQCTIPT SETQLTSCTL QQNEHF