YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.48
Transmembrane Helix	27	49	0.86
Non-Cytoplasmic	50	279	0.50
Transmembrane Helix	280	307	0.72
Cytoplasmic	308	308	0.28
Transmembrane Helix	309	334	0.75
Non-Cytoplasmic	335	335	0.32
Transmembrane Helix	336	357	0.65
Cytoplasmic	358	392	0.70
Transmembrane Helix	393	414	0.75
Non-Cytoplasmic	415	426	0.58
Transmembrane Helix	427	448	0.85
Cytoplasmic	449	498	0.83
Transmembrane Helix	499	520	0.87
Non-Cytoplasmic	521	735	0.82
Transmembrane Helix	736	756	0.91
Cytoplasmic	757	762	0.66
Transmembrane Helix	763	784	0.92
Non-Cytoplasmic	785	790	0.69
Transmembrane Helix	791	812	0.74
Cytoplasmic	813	832	0.86
Transmembrane Helix	833	855	0.92
Non-Cytoplasmic	856	865	0.78
Transmembrane Helix	866	889	0.90
Cytoplasmic	890	914	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVKKTHDV SDNTWFVRII HWFFQKCSAV ICYCPWTCII LTIMLTLVLS LKIPFTRMQN  60
   61 DISDFTPFGA RSRVELEKYR KFFNNHGEPK AIYAFITSKV GDNMLGISQL NDTVHVLDTI 120
  121 SRDFYLKTSQ GPKNFEEYCS GFCLLNEPVK HFYSGMLISG QHGTDFSHLD LGYPITTVLG 180
  181 TKLYMDPNFF GVKVTTSNNK VESIADGNTK LFGDHTKQEP NNIREVSLVV LQFRSELGDE 240
  241 VTPEDLRNYE HQILDYIHDE YQSEHINVYI LTDSYITEEI VRAGLTLLPF LVIGFTIMAV 300
  301 FSSITFVPIL AVMACVCPFM ACGASLGAMF FIGFRFGSIL CVTPFLVLAI GVDDSYLMAN 360
  361 AWQRITCHRR KHARFESVNV ELKNRITEMF IETGPSITIT TITNALAFGI GATTPAAEIQ 420
  421 LFSIGNALAV ITDFVFTITF YGALMAVVGR YEIEQELKTQ KPLPESESPS ETSSTGSMRS 480
  481 SELDDCKFRR MIANVCKFLT NTWVCSVVLG LLAVYWYICI VGTVNIKSEL SPNKLFLAES 540
  541 NIVEIFKQRK SHIIPYYSAC WVLVENPGDI NNPNQRAKLE ELIESFEALP SANGRYSTKF 600
  601 WLRDYEDFLK QSEEIDLPME EEEDEELAIQ FTVNGSQVVT PSQPFGQGNE LRQFLEWPEF 660
  661 SFWKGFIQVN ESTYQMSKFL VTTAYHGSDL VDWSNRAKLL NEWRSVADQD KFKSLNVTVY 720
  721 EEDAKFLDLI ETMSPVAIQS ALWTFASMFL VAALFISHPP TLFVATFSIL STSLGVFGIM 780
  781 SWWGADLDPI MMSATVMSIG FSVDIPSHVS YHFYQTAKDT SDIRRRLQMT IEAVGFPIFE 840
  841 ASLSTSLCVM SLFFVDLNMA QIFAKCMLLV VVIGMVHGML VMPVIFALLD TVPRKLKPRK 900
  901 QHLASTVTVV TVVP