YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-9
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.80
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	37	0.98
Transmembrane Helix	38	58	0.94
Cytoplasmic	59	66	0.86
Transmembrane Helix	67	87	0.88
Non-Cytoplasmic	88	98	0.73
Transmembrane Helix	99	117	0.87
Cytoplasmic	118	127	0.76
Transmembrane Helix	128	151	0.89
Non-Cytoplasmic	152	161	0.75
Transmembrane Helix	162	184	0.86
Cytoplasmic	185	191	0.84
Transmembrane Helix	192	215	0.79
Non-Cytoplasmic	216	233	0.80
Transmembrane Helix	234	256	0.91
Cytoplasmic	257	263	0.74
Transmembrane Helix	264	283	0.82
Non-Cytoplasmic	284	287	0.69
Transmembrane Helix	288	307	0.87
Cytoplasmic	308	324	0.82
Transmembrane Helix	325	344	0.86
Non-Cytoplasmic	345	351	0.74
Transmembrane Helix	352	376	0.88
Cytoplasmic	377	393	0.86
Transmembrane Helix	394	413	0.90
Non-Cytoplasmic	414	418	0.76
Transmembrane Helix	419	442	0.86
Cytoplasmic	443	667	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRLFVFFL ICYATADKIE KELISDGFQL FTWKWDDVHH VYVITVWLLI ASLAKILFNL  60
   61 MKPISKWCPD SSLLIIVGLA LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA 120
  121 LFENFDSVLV FSVFGTIWNT FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV 180
  181 IAVFEEIHVN EFLFINVFGE ALFNDGVTVV LYQMFKSFAL IGSENLSVLD YATGGLSFFV 240
  241 VALGGAAVGI IFAIAASLTT KYTYDVRILA PVFIFVLPYM AYLTAEMVSL SSIIAIAICG 300
  301 MLMKQYIKGN VTQAAANSVK YFTKMLAQSS ETVIFMFLGL STISSQHHFD LYFICATLFF 360
  361 CLIYRAIGIV VQCYILNRFR AKKFEMVDQF IMSYGGLRGA IAYGLVVSIP ASITAKPMFI 420
  421 TATIAVIYFT VFLQGITIRP LVNFLKIKKK EERDPTMVES VYNKYLDYMM SGVEDIAGQK 480
  481 GHYTFIENFE RFNAKVIKPV LMRHQKRESF DASSIVRAYE KITLEDAIKL AKVKNNIQNK 540
  541 RLERIKSKGR VAPILPDKIS NQKTMTPKDL QLKRFMESGE NIDSLYTLFS DLLDRKLHEM 600
  601 NRPSVQITDV DGQDDIQDDY MAEVGSRSNL SAMFRSTEQL PSETPFHSGR RQSTGDLNAT 660
  661 RRADFNV