YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.97
Transmembrane Helix	18	39	0.91
Cytoplasmic	40	46	0.90
Transmembrane Helix	47	67	0.88
Non-Cytoplasmic	68	78	0.71
Transmembrane Helix	79	97	0.87
Cytoplasmic	98	107	0.75
Transmembrane Helix	108	131	0.89
Non-Cytoplasmic	132	141	0.74
Transmembrane Helix	142	164	0.86
Cytoplasmic	165	171	0.83
Transmembrane Helix	172	195	0.79
Non-Cytoplasmic	196	213	0.79
Transmembrane Helix	214	236	0.91
Cytoplasmic	237	243	0.73
Transmembrane Helix	244	263	0.81
Non-Cytoplasmic	264	267	0.69
Transmembrane Helix	268	287	0.87
Cytoplasmic	288	304	0.82
Transmembrane Helix	305	324	0.86
Non-Cytoplasmic	325	331	0.74
Transmembrane Helix	332	356	0.88
Cytoplasmic	357	373	0.86
Transmembrane Helix	374	393	0.90
Non-Cytoplasmic	394	398	0.76
Transmembrane Helix	399	422	0.86
Cytoplasmic	423	647	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHEYDIEEL FTWKWDDVHH VYVITVWLLI ASLAKILFNL MKPISKWCPD SSLLIIVGLA  60
   61 LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA LFENFDSVLV FSVFGTIWNT 120
  121 FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV IAVFEEIHVN EFLFINVFGE 180
  181 ALFNDGVTVV LYQMFKSFAL IGSENLSVLD YATGGLSFFV VALGGAAVGI IFAIAASLTT 240
  241 KYTYDVRILA PVFIFVLPYM AYLTAEMVSL SSIIAIAICG MLMKQYIKGN VTQAAANSVK 300
  301 YFTKMLAQSS ETVIFMFLGL STISSQHHFD LYFICATLFF CLIYRAIGIV VQCYILNRFR 360
  361 AKKFEMVDQF IMSYGGLRGA IAYGLVVSIP ASITAKPMFI TATIAVIYFT VFLQGITIRP 420
  421 LVNFLKIKKK EERDPTMVES VYNKYLDYMM SGVEDIAGQK GHYTFIENFE RFNAKVIKPV 480
  481 LMRHQKRESF DASSIVRAYE KITLEDAIKL AKVKNNIQNK RLERIKSKGR VAPILPDKIS 540
  541 NQKTMTPKDL QLKRFMESGE NIDSLYTLFS DLLDRKLHEM NRPSVQITDV DGQDDIQDDY 600
  601 MAEVGSRSNL SAMFRSTEQL PSETPFHSGR RQSTGDLNAT RRADFNV