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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: shl-1
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAAWLPF ARAAAIGWVP ISRQPMPQAP VAIQAKDLAV DHVSDEKLAI NISGRRFETW  60
   61 KNTLEKFPET LLGSNEKEFF YDEDTGEYFF DRDPDIFRHI LTFYRTGKLH YPRHECLVAY 120
  121 DEELSFFGIM PDLISDCCYE DYKDKKRENQ ERLQEERVEN ADISTLKLSL KEKMWAAFEN 180
  181 PHTTSIALVF YYVIGFFIAV SVMCNIVETI PCGYEDNVSV TCGEAYEEQF FVIDTACVII 240
  241 FTIEYFLRLI SAPDRIKFMR SIMSVIDVIA IMPYYVSLVL TDNKDVSGLF VTLRVFRVFR 300
  301 IFKFSRHSQG LRILGYTLKS CASELGFLVF SLAMAIIIFA TIMYYAEKKV DATRFTSIPS 360
  361 AFWYTIVTLT TLGYGDMVPS TIMGKIVGGV CSLSGVLVIA LPVPVIVSNF SRIYHQNQRA 420
  421 DKRKAQKKAR LARIRIVKNA SGLALFNKKR AHEARMLAFE QGHLSFDALR DEDIFEIQHH 480
  481 HLLQCLEKAT EREFVESEVM FEGGRNTPPP SETASLKGKT KRKRRLCCVS KENEEMEELD 540
  541 RETRVTFNQN MDQICELPKP DEMELNHRNN DKICVSQLWK YKIEVKLTFY VQFFFFQFSR 600
  601 SVDKVLFIF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle