YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clh-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.78
Transmembrane Helix	111	132	0.91
Non-Cytoplasmic	133	189	0.75
Transmembrane Helix	190	220	0.72
Cytoplasmic	221	241	0.66
Transmembrane Helix	242	263	0.72
Non-Cytoplasmic	264	270	0.62
Transmembrane Helix	271	291	0.74
Cytoplasmic	292	298	0.65
Transmembrane Helix	299	323	0.83
Non-Cytoplasmic	324	333	0.58
Transmembrane Helix	334	354	0.82
Cytoplasmic	355	372	0.49
Transmembrane Helix	373	396	0.90
Non-Cytoplasmic	397	413	0.50
Transmembrane Helix	414	434	0.85
Cytoplasmic	435	467	0.57
Transmembrane Helix	468	490	0.73
Non-Cytoplasmic	491	493	0.34
Transmembrane Helix	494	513	0.68
Cytoplasmic	514	541	0.54
Transmembrane Helix	542	570	0.67
Non-Cytoplasmic	571	571	0.37
Transmembrane Helix	572	589	0.52
Cytoplasmic	590	797	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERAGRSSTL GSTDDVELEP SGTSATIHLD MTAGGGSSSS DFNPFGAIDD VRFKTDDDLP  60
   61 DVMAPPFFSK YGDFHTIDWQ RDLARDRLRH KMISKKKVDF PLGLLQSGWD AGAGWICVLF 120
  121 VGLAAGATAG IIDIGARWMS DLKTGVCADR FWLDHEHCCW SSNDTFYKDD DCKAWTKWPW 180
  181 MLNYYNSSSF LFLFLEWIFY IGWAVAMSTL AVLFVKIFAP YACGSGIPEI KCILSGFVIR 240
  241 GYLGKWTFII KSVGLILSSA SGLSLGKEGP MVHLACCIGN IFSYLFPKYG LNEAKKREIL 300
  301 SASAAAGVSV AFGAPIGGVL FSLEEASYYF PLKTMWRSFF CALVAGIILR FVNPFGSNQT 360
  361 SLFHVDYMMK WTFIELVPFA ILGLFGGIIG SLFIFANIRW SRFRKNSKML GGNPIYEVML 420
  421 ITLVTAAISY FNPFTRKSAQ SMIQQLFDRC EDQIDEDSLC DQNKALSIAF GQLLWALIFK 480
  481 FVITIFTFGI KVPCGLFVPS IGMGAIAGRI LGITVDQIFR AVQATPGHSD YFTCQIGKDC 540
  541 VMPGLYAMVG AAAVLGGVTR MTVSLVVIMF ELTGSLEFIV PTMVATMFSK WIGDGISKMG 600
  601 IYEAHIELNG YPFLDSKGEY PYSTVASQVM RPSIHRQVAD EMSMSDLREL KNELSVITES 660
  661 GMTLGDLESL LRQTDFNGFP VVVSQNSMHL VGFITRRDIL LALHTARKTQ PYVVTNSIAY 720
  721 FSDGVPDAMP GGPAPLRLRK ILDMAPMTVT DQTPMETVID MFRKLGLRHV LVTKNGKVLG 780
  781 IITKKDILQF MRNKNSQ