YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tat-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.83
Transmembrane Helix	63	80	0.71
Non-Cytoplasmic	81	82	0.49
Transmembrane Helix	83	105	0.61
Cytoplasmic	106	188	0.80
Transmembrane Helix	189	213	0.93
Non-Cytoplasmic	214	245	0.89
Transmembrane Helix	246	270	0.82
Cytoplasmic	271	822	0.93
Transmembrane Helix	823	841	0.81
Non-Cytoplasmic	842	851	0.54
Transmembrane Helix	852	873	0.71
Cytoplasmic	874	901	0.71
Transmembrane Helix	902	925	0.86
Non-Cytoplasmic	926	938	0.68
Transmembrane Helix	939	960	0.90
Cytoplasmic	961	969	0.58
Transmembrane Helix	970	991	0.90
Non-Cytoplasmic	992	1015	0.66
Transmembrane Helix	1016	1039	0.86
Cytoplasmic	1040	1222	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWLPCCSS TSNEKNAPTE RRLRANDREY NAQFKYADNV IKTSKYNIIT FIPQNLFEQF  60
   61 QRIANFYFLV LMILQFIPQI SSISWYSTAV PLVIVLAFSA IKDGYDDAQR HISDRNVNGR 120
  121 KSYVVRNGSL CEEDWSNVKV GDVIRMMSNQ FVANTRWCYG VVVFAGKDTK LMMNSGKTKF 180
  181 KRTSLDRFLN ILIVGIVLFL IAMCLICTIL CAVWEYQTGR YFTIYLPWDD VVPSPEQRGG 240
  241 RQIALIAFLQ FFSYIILLNT VVPISLYVSV EIIRFIHSLW INYDTQMYYE NGEKSVPAKA 300
  301 HTTTLNEELG QVQYVFSDKT GTLTRNIMTF NKCTINGISY GDIYDHKGEV IETNDKTKSL 360
  361 DFSWNSASEP TFKFFDKNLV DATKRQVPEI DQFWRLLALC HTVMPERDKG QLVYQAQSPD 420
  421 EHALTSAARN FGYVFRARTP QSITIEVMGN EETHELLAIL DFNNDRKRMS VIVKGPDGKI 480
  481 RLYCKGADMM IMQRIHPSTS QIMRTSTNTH LADFANIGLR TLCLGYKDLD PAYFSDWDSR 540
  541 VKKASAAMQD RESAVDALYE EIEKDLILIG ATAIEDKLQD GVPEAIARLS EANIKIWVLT 600
  601 GDKTETAINI AYSCRLLTDE TKEIVVVDGQ TDTEVEVQLK DTRNTFEQIL ALPSPLGGKP 660
  661 RIEIETIHEE SEAISSARSM DRNIVTPDLK SAEMAEHESG GVALVINGDS LAFALGPRLE 720
  721 RTFLEVACMC NAVICCRVTP LQKAQVVDLV KRNKKAVTLS IGDGANDVSM IKTAHIGVGI 780
  781 SGQEGMQAVL ASDYSIGQFK YLERLLLVHG RWSYIRMAKF LRYFFYKNFA FTLTNFWYSF 840
  841 FCGYSAQTVF DAVLIACYNL FFTALPVLAM GSLDQDVDDH YSLRYPKLYL PGQFNLFFNM 900
  901 RIFIYSVLHG MFSSLVIFFI PYGAFYNAAA ASGKDLDDYS ALAFTTFTAL VVVVTGQIAF 960
  961 DTSYWTAISH FVIWGSLVLY FLVCFLLYEW LPVSWIVKTS SSISYGVAFR TMVTPHFWFS1020
 1021 ILMVSVVLLL PVMLNRFFWL DTHPSFADRL RIRKKMGKKP SAKDDKKTAF KRTAATRRSV1080
 1081 RGSLRSGYAF SHSQGFGELI LKGKLFKNVE NLRGKNNSNA KIHPTSDDLQ PMLISSVPDD1140
 1141 SQGASSINAM HLPMGTRPQN VPHTLNVNTD DWSQSSDFRP AYAKEPSPLQ GTVIRGDGRS1200
 1201 HRNHVYSRET QVEEQPDVIT RL