YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cho-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.95
Transmembrane Helix	5	25	0.94
Cytoplasmic	26	46	0.95
Transmembrane Helix	47	69	0.87
Non-Cytoplasmic	70	82	0.78
Transmembrane Helix	83	104	0.89
Cytoplasmic	105	127	0.92
Transmembrane Helix	128	152	0.78
Non-Cytoplasmic	153	163	0.55
Transmembrane Helix	164	185	0.84
Cytoplasmic	186	189	0.77
Transmembrane Helix	190	213	0.84
Non-Cytoplasmic	214	233	0.93
Transmembrane Helix	234	254	0.95
Cytoplasmic	255	267	0.87
Transmembrane Helix	268	291	0.89
Non-Cytoplasmic	292	333	0.95
Transmembrane Helix	334	359	0.86
Cytoplasmic	360	379	0.87
Transmembrane Helix	380	401	0.93
Non-Cytoplasmic	402	405	0.81
Transmembrane Helix	406	428	0.88
Cytoplasmic	429	437	0.75
Transmembrane Helix	438	458	0.82
Non-Cytoplasmic	459	472	0.77
Transmembrane Helix	473	493	0.92
Cytoplasmic	494	576	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLLGIVAI VFFYVLILVV GIWAGRKSKS SKELESEAGA ATEEVMLAGR NIGTLVGIFT  60
   61 MTATWVGGAY INGTAEALYN GGLLGCQAPV GYAISLVMGG LLFAKKMREE GYITMLDPFQ 120
  121 HKYGQRIGGL MYVPALLGET FWTAAILSAL GATLSVILGI DMNASVTLSA CIAVFYTFTG 180
  181 GYYAVAYTDV VQLFCIFVGL WVCVPAAMVH DGAKDISRNA GDWIGEIGGF KETSLWIDCM 240
  241 LLLVFGGIPW QVYFQRVLSS KTAHGAQTLS FVAGVGCILM AIPPALIGAI ARNTDWRMTD 300
  301 YSPWNNGTKV ESIPPDKRNM VVPLVFQYLT PRWVAFIGLG AVSAAVMSSA DSSVLSAASM 360
  361 FAHNIWKLTI RPHASEKEVI IVMRIAIICV GIMATIMALT IQSIYGLWYL CADLVYVILF 420
  421 PQLLCVVYMP RSNTYGSLAG YAVGLVLRLI GGEPLVSLPA FFHYPMYTDG VQYFPFRTTA 480
  481 MLSSMATIYI VSIQSEKLFK SGRLSPEWDV MGCVVNIPID HVPLPSDVSF AVSSETLNMK 540
  541 APNGTPAPVH PNQQPSDENT LLHPYSDQSY YSTNSN