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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ddr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIALVLLAI YGTTTTNTLR IDQCGENALG MQNGDIADSQ ITASSSFDKQ SVGPQNARLH  60
   61 SELASGAWCP KPQINSKSYE FLQVTLNDTF LITSVETQGR YGNGTGREFA SHYMIDYLRP 120
  121 GSQWIRYKNR TGHVYMDGNF DTTTPVIRVL DPPIVASRIR FVPSSKNTRT VCMRAEIHGC 180
  181 KHEGVTYYST VPDGSRLDTL DFKDSMFEDS QIYTESGIKR YGSWPANRRF RSAASPFEKN 240
  241 QMNNSWIGWN RDTTDGRITI LFEFEEVHNF TDVVLATFGN RIDGIDVIFS QDGKTFPLFS 300
  301 QISSSERQSL NNTSRRYDFR VPLHNRAGRK VRISIKFSSD WMFLTEVHFT SAANLTLLSE 360
  361 KIPPPSSAAT QQLLVVCGII FLTIFACVAY CVSVCLKRRQ KNKSVDSNVK KDLIITHMGN 420
  421 KPTCHVFPSN GKLSNGHYEV ANDILYARSQ KSTLLSVSSK STFSCRAIPP TWTDFNFPPP 480
  481 PEGREEHTYS QPVSPENSSN GSYKSVRKIQ ALKKYPSSAL LIGKAIGEGK FTMIKECIIF 540
  541 GGLKCAHKST KEEDCVHGTR ALGDEIACLL QCGRHPRIVE LFGVDESYNL LLEHVEYGCI 600
  601 RNFWMASEAP LDTEFLVRIC KDIYSAMAYL ESIRIVHGHF TPNNILMDGE FHAKVCSPRG 660
  661 PSHHAQLRYS APESIVNNEF THKSDAWAVA TTVYEMAYQC RQRPYEELTN EQIVDNACAL 720
  721 LDHQPNAVVP LMPTVFNYEI LQLLTRCFRV DQLERPTFER LVKPFQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle