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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ajm-1
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATSERPRS PLDLPPPPAS VVLHPSAPPP PPPPLSSTEV VGNTTTTTTT HYAPKTWNDP  60
   61 SITTAPKIPV SLLSGAQPLP SVLTQRTTTS SYSAPNYSAS SMSGVPSDVA PPPPLPIPNQ 120
  121 SSSSAASYQH HHASSISKSI SSSREDLLSE HATSRSTVRE IPVHRAPSTA PSHSSVFEYH 180
  181 MMPTTTSTYH HVETPSDEYY RREVMTRTII TRSTEALSQT PLGRPASPLD RYLPYPTTTT 240
  241 TTSGDGRTRE EKTVDYKVTY HRDIEEQERR IREDQARRQQ EEQDRRDRED NARRILAQRE 300
  301 HQEMERLREQ QNLSERALAE RERADKERLQ QERLLRQQRE KKRREEWDRL ESIRLAEEEA 360
  361 ELARRRALEK ERIDREKAEE ERKTMERLER ERARLERERL EEERRQKEKA ETERIERERR 420
  421 EHERIEIERI ERIKRERIER ERREREEKKA EEDRLLRERL ELERIERERR ELEARERQEL 480
  481 ELQRREAEDR ERQRLEDEAR EMRRREEERR EAELVADVHR QAEERERLRK RQEREEAERL 540
  541 ERIRLEQQKI DMERIDAERR ERERKEEERR EFELIEAARR KKEARDRDRL DEMERERVRE 600
  601 EEERREKERR EQERRIAAEK ERKRRQEEEE EIARLNELQR AAAARQAQRN AELDRQRQRD 660
  661 ELDRKAQELS EREMREKERR DRERANEEAQ LADLLERERH NQLIRENERR EAVERANNRR 720
  721 LEDRRSRDKL DHIVRERSEK EQFELEKRRL LAEKEAMNRK KNHLLSSETL AKLTQPMYYT 780
  781 TREPEVTTKV ERQVIERIDR NVWVEDVPYA PSQSAMGYLD NDENNRDRLY NPNDLNRNGS 840
  841 SRSRYQRAKN EKARRDFYHS SQDSAETVQP TPLSSNLVSF RQKSYPSRKV CACLCESVCA 900
  901 FCFLIHSFLF HCPLDIKISI IYIIIFVIRP FEIVSFWNYS PCIF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle