YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cdf-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTMEDRSV KADKADRDDN NTTSTELLGK MRQTKVIDNC SHGTHTLEHD LRLKGEPIGK  60
   61 SESVKGVSRS LIIQIGMTVI FCALEFITGV VCSSIAMLAD SYHMAADVMA LIVAFTCIKI 120
  121 ATRPSTRLGY GWVRAETLGG FFNGIFMCTV CVLVFQEAVG RIINVHMITH PLQVLVIGFI 180
  181 GLLINLFGMF NLSGHGHSHG GGSHGHSHGG SHGHSHNNKK TKKNDGHGHS HANGHGHSHD 240
  241 GKSDCNGEEE PDHTRLNGKF RSASAMANSD ANVRLLDNDD NSNDIIERRL SGVNSQNTII 300
  301 ATVDRQMTPY GTHMASEVLN VSSNNLDKSA QKTEQKKDKN VNIHGVWLHL LSDAFGSVIV 360
  361 MISAGFVYFL PTWKIAAYLD PILSISLASI MGFTAVVLVK TSGEKLLKQT PEGLDLEKVK 420
  421 KDLCSIVGVS KVEKLSVWTL CGQRIIAAAH VNICHPAVFP EAAYKIKNYF HDLGVHSTTI 480
  481 EPTFEDTCMQ SMRIMVKKVV DGKSIEEPVS VSTENEITE

Type	Start	End	Confidence
Cytoplasmic	1	70	0.99
Transmembrane Helix	71	97	0.82
Non-Cytoplasmic	98	102	0.77
Transmembrane Helix	103	122	0.92
Cytoplasmic	123	137	0.87
Transmembrane Helix	138	159	0.90
Non-Cytoplasmic	160	168	0.83
Transmembrane Helix	169	190	0.88
Cytoplasmic	191	345	0.98
Transmembrane Helix	346	369	0.90
Non-Cytoplasmic	370	376	0.81
Transmembrane Helix	377	399	0.90
Cytoplasmic	400	519	0.98