YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	flr-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINYNRNAV ELKLSSQLLQ WLDQRLPLGD PMRIPSIDSY KYIQDLGKGR FGTVCKFSNG  60
   61 NTFETVKKVD LTIFNHWTQS ETKVSNRLDT FLYEFRHLHK VTNDNNRIVN FLGIYADSNQ 120
  121 MYIMSEYLPR GSVKDLLVKE TLGEDTAIKY LMETVEALDY LHNLSPPVIH RDIKAANLLI 180
  181 TSNDSIKLAN FGLVRDLAVD GFGIAIASEI TLDFRATLLY VAPEVLSSAL GPGNRNAYEL 240
  241 PADIWALGCT FIEMLLKRPP HFEYFGHIDE IPKVLLGYAK SEDGKVLPYT SEVLVPSSSN 300
  301 CVQKIVDLVF IKSPEHRPNT HKLRIQIKKI LDDDSESEEE TDISHPISNS NTDSSTAISH 360
  361 NHSNDRKVGR AGTCLPIESM EYAAVRKELK KRSKPKSNNI MQIFVASGYY LSRILYFLNI 420
  421 LTRSICYLLL FLSLGITALG SFLLISYFVV RFVRYLIAIN CNCDLMQPQY LIISGILIVL 480
  481 MFALLFSCCM VALGEYKFRM ANQTLDGSKF YLPRPQKSAV LCGITVITGK EDAKDTAQNM 540
  541 EEEIHLTPSV RRNHDDYYYD ESSGPANEEN

Type	Start	End	Confidence
Non-Cytoplasmic	1	399	0.78
Transmembrane Helix	400	417	0.77
Cytoplasmic	418	426	0.64
Transmembrane Helix	427	450	0.91
Non-Cytoplasmic	451	470	0.82
Transmembrane Helix	471	493	0.93
Cytoplasmic	494	570	0.86