YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGFFGPLYE QLVGMLRKQQ GQLAFDTIDR VNAWFTPFVL VAMTLAISCK QYFGQPIKCW  60
   61 TPREFSGSWD GYVHDFCFIE NTYFVPNGTE VTDEARGGRH INYYRWVPLV LLFQAAMFVL 120
  121 PYHLWNLFHK RTTINLKGSL RFFEGALKKL EPAQACESFA GEIWNRLSDI RNSSNKLYGF 180
  181 QATINYFLLK LGFIVNCILQ MVLLKHFLDV DDYFWGFFHL WNVEFKGTAE KEDSIFPRIV 240
  241 LCDFKVRNLG QQHQHTVSCI MILNMIIEKL YICFYFWLIF VFVVTTAGMI HFAFQILFRR 300
  301 HSLIPTNLNN KNKMNPTRSH EFIKDYLNFD GCLLLTYVDA QFGAFRTSQV IDGLVHRFTN 360
  361 ELDSDSSAVT SLNEDHPERY VAFNTDTIPM DRYARKHHSL IEEVDGPSAP PANEEKKEI

Type	Start	End	Confidence
Cytoplasmic	1	103	0.56
Transmembrane Helix	104	125	0.86
Non-Cytoplasmic	126	185	0.59
Transmembrane Helix	186	204	0.77
Cytoplasmic	205	270	0.71
Transmembrane Helix	271	294	0.91
Non-Cytoplasmic	295	419	0.74