YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.95
Transmembrane Helix	39	60	0.86
Cytoplasmic	61	71	0.90
Transmembrane Helix	72	92	0.91
Non-Cytoplasmic	93	107	0.79
Transmembrane Helix	108	129	0.89
Cytoplasmic	130	138	0.73
Transmembrane Helix	139	158	0.91
Non-Cytoplasmic	159	173	0.86
Transmembrane Helix	174	194	0.93
Cytoplasmic	195	300	0.94
Transmembrane Helix	301	315	0.53
Non-Cytoplasmic	316	331	0.51
Transmembrane Helix	332	354	0.90
Cytoplasmic	355	413	0.66
Transmembrane Helix	414	432	0.78
Non-Cytoplasmic	433	436	0.69
Transmembrane Helix	437	458	0.90
Cytoplasmic	459	516	0.96
Transmembrane Helix	517	542	0.85
Non-Cytoplasmic	543	562	0.75
Transmembrane Helix	563	577	0.42
Cytoplasmic	578	955	0.56
Transmembrane Helix	956	989	0.64
Non-Cytoplasmic	990	1008	0.55
Transmembrane Helix	1009	1035	0.83
Cytoplasmic	1036	1082	0.66
Transmembrane Helix	1083	1103	0.84
Non-Cytoplasmic	1104	1107	0.69
Transmembrane Helix	1108	1127	0.93
Cytoplasmic	1128	1191	0.95
Transmembrane Helix	1192	1214	0.80
Non-Cytoplasmic	1215	1219	0.80
Transmembrane Helix	1220	1241	0.51
Cytoplasmic	1242	1525	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLVRELVC GDKTELLEPG WKNRSSIPHV TKCGQHTDFS TIPTLFLVVF SFIVIYQLLH  60
   61 TRTAQLRCFS PISFRIILGC LLVVDLIATV IYDLYLYVSQ SPNFEVVHFY GDLVQFGGIC 120
  121 LALILTVACK NKGIITSGVI TLYWLLVVVC GIPEFRFYLS GFIYNEYALE GIRATLYIIA 180
  181 FTFSALELFL CCFADVPSDM YKSESSCPEY TASFINRLTF QWFTGLAYLG NKKSLENEDL 240
  241 WDLNEIDKAE NLIPSFMQNL KPRIDEYHQN IKKDPSAALP KNHPSFVIPI FKTYKYTLLA 300
  301 GFFYKLCFDM LQFLAPQLLK QLIGFIEDKN QPVWIGCSIV GIMFFSSFLQ SMFLHQYYHS 360
  361 MFRLGMHVRS VLTSAVYSKA LNLSNEARKG KTIGAIVNLM SVDIQKIQDM APTIMLFWSA 420
  421 PLQIFLSIYF LWKFLGVAAL AGLVVLILAL PVNGLIAIQM RKCQTEQMKL KDERIKMMSE 480
  481 ILNGMKVLKL YSWERSMENM VLKIRERELH ILKKLSYFMA AIVFSWICAP FLASVISFVV 540
  541 YVYLDPENNV LTPEITFVAL SLFDILRMPL AMVAMVYGEA VQCSVSNTRL KEFFAAEEMS 600
  601 PQTSISHGET DSAIEVENGL FSWSSDEDPT LREISFKIQK GQLVAIVGKV GSGKSSLLHA 660
  661 LLGEMNKLSG SVQINGNIAY VPQQAWIQNM SLRNNILFNK PYDLENYEDV VKNCALKEDL 720
  721 ANLPAGDRTE IGEKGINLSG GQKQRVSLAR AVYQNPDIIL LDDPLSAVDS HVGKHIFENV 780
  781 ISSSTGCLAS KTRVLVTHGL TYLKHCDQLI VLKEGTISEL GTYQELLNNS GAFAEFLEEF 840
  841 LIEESKTRGR VASIGDGSGE VDEILRDLGQ VKPGILKRLE SHLSQESDKE DTSARAIEYS 900
  901 RDSSRRSVLL HSPRSQHEEN EALLGAISED VPAQENTQLI EKETVETGKV KFEVYIAYFQ 960
  961 AISIPITLLF FFLYVGSSGL GILSNFYLAK LSDHAKSGNR TSSDAKMELG IYAVLGMGQS1020
 1021 FVVLIASIIL TIGVLRASRI LHAGLLGNIM RSPMAFFDVT PIGRILNRIG KDIEAIDRTL1080
 1081 PDVIRHMSMT IFNVVATLVV IMWATPWAGI AFAILSVIYF IVLRFYISTS RQLKRLESAS1140
 1141 RSPIYSHFQE SIQGASSIRA FGVVDNFIKQ SQQRVDDHLI AYYPSIVANR WLAVRLEMVG1200
 1201 NLIVLSAAGA AVYFRDSPGL SAGLVGLSVS YALNITQTLN WAVRMTSELE TNIVSVERIK1260
 1261 EYTVTPTEGN NSRRLAAKSW PEKGEISIKN FSVRYRPGLD LVLHGISAHI APSEKVGIVG1320
 1321 RTGAGKSSLT LALFRIIEAD GGSIEIDGIN IANLQLEQLR SCLTIVPQDP VLFSGTMKMN1380
 1381 LDPFSAYSDS QVWEALENAH LKPFVKSLQD GLEHKISEGG ENLSVGQRQL ICLARALLRK1440
 1441 TKVLVLDEAA AAVDVETDSL IQKTIREQFK ECTVLTIAHR LNTVMDSDRL LVLDKGRVAE1500
 1501 FDSPKNLLAN PDGIFYSMAK DANVV