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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRINRWIWWA TVILLYLRTG LAADLSSEEN DRKSSDDLDN FNSTKIEPDK PKTAKELGVK  60
   61 SCESNQDCVH DGVCHRGNDG HGICMCPRSC PAITPKQCGY NYRTPSTCLL MDADYRSKYD 120
  121 VKEPTCYSRK CVCPPQFDDV HVTANQKPLR LNSTLLPTKC DKRDLAVVAR AHPSTSVSKG 180
  181 IDVTLFCCIN VDPEGFIDVA SVFFIQNGTI MREATSHPFA PRNGLARRVH EKYSCWELEI 240
  241 KNAQTSDSGS YMCRVTASAS DLDVTDTMQF EVKAPRQIKN LTVNPSERDA IVTWESEGGE 300
  301 DMAIDLRLVR RTDTRGQVVF SKDNLTSPVS IKDLRAATPY TLFVSGNNGQ VPFEFTEHFT 360
  361 TKQKRPFPPK EEDVRVLNSG SALSCEVEWK SPAEPNGRIT KYFVSVRGAM RKSDGSLTPD 420
  421 DLPAAVEVDK RCANWDGDEN TSKHNGINPI DFANEFYSCK FGPLKPNRNY TVTVWAENSA 480
  481 GRSLPAVFHK NCVTNYAQPD MVETPQPLLS NNHSTFSLTF PQPPDDINGP ISCYYIAIVP 540
  541 LPANVSLDIL PKSEEIVMHS FSKVFTNNLL PSSAEEKRFF AYIAESYVQL PEETTIGDGV 600
  601 RVSDLKACNV QYLSRYSSED LALRRGLKYT GFLIVRVDKE EELNRKDVRN GADPNIFRNL 660
  661 IDKSVSPTSR TRTASPMSRH LRQLHLSGPA YGYSAYFKPI LLDTESSSSG FGIFMKIILP 720
  721 FLLFLAFATG VTMFFVNRKG HMLSTWCPLF TKMTSKDVVE RTLLKQTFGA IPVDDLPTEY 780
  781 VVRHRDTDFL FAQEYESLPH FQLDTVASNR KENAIKNRYN DIRAFDDTRV KLKKINGDDY 840
  841 SDYINANFIK SWKEKKLFIA AQAPVDATIG DFWRMVWEQE SYLIVMVANL TEKNRQQCAK 900
  901 YWPDEQITRY GDIIVEPASF SFHSDYAIRA FDIAHIGECG PDVIPNGNGV EYANVPIVKG 960
  961 QFANNSRRIL QYHFTNWNDY KAPECSTGLL RFMYRLRELP QFNNSPVVIH CSAGVGRTGT1020
 1021 FISIDSMLDQ CLAEDKANIF EFVCNLRRQR NLMVQSLEQY VFIYKALAEW HMYGDTDEDV1080
 1081 RDFEDHYQRL CASNRDRAVS FNQQSSTNGS ISPRVAIVSS RESMTTSNGE TGLEEEFKKL1140
 1141 ERNLTTPLSS NFAAKDENLL KNRYEAAVPF DKYRVILPPT IGHADSSYIN ASHIKGYFFD1200
 1201 YIAAQDPVSE GTAFDFWRMI ADQNVTTVVM LSDETDWSDV EKYWPIDGSG TECHFGSERN1260
 1261 SVNVTCVSEE HHQDFIIRNL SYSMKDNESM PANQEVVQYS YTGWPSDSIV PKSANSLMNL1320
 1321 IEMVLQRQSS LMGSQAPIVV HCRNGSSESG IFICISLLWL RQKAEQRIDV FQTVKGLQSH1380
 1381 RPMMFTRFEQ YSFCYRALAD YISKTYR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle