YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.94
Non-Cytoplasmic	40	73	0.95
Transmembrane Helix	74	98	0.91
Cytoplasmic	99	107	0.84
Transmembrane Helix	108	128	0.92
Non-Cytoplasmic	129	133	0.86
Transmembrane Helix	134	156	0.91
Cytoplasmic	157	166	0.85
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	195	0.78
Transmembrane Helix	196	219	0.87
Cytoplasmic	220	281	0.97
Transmembrane Helix	282	302	0.85
Non-Cytoplasmic	303	319	0.87
Transmembrane Helix	320	342	0.89
Cytoplasmic	343	350	0.87
Transmembrane Helix	351	371	0.96
Non-Cytoplasmic	372	377	0.89
Transmembrane Helix	378	397	0.93
Cytoplasmic	398	416	0.87
Transmembrane Helix	417	436	0.95
Non-Cytoplasmic	437	442	0.77
Transmembrane Helix	443	465	0.92
Cytoplasmic	466	512	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKEAGTPP PIPSREGRLQ PTLLLATLSA AFGSAFQYGY NLSVVNTPHK VFKSFYNETY  60
   61 FERHATFMDG KLMLLLWSCT VSMFPLGGLL GSLLVGLLVD SCGRKGTLLI NNIFAIIPAI 120
  121 LMGVSKVAKA FELIVFSRVV LGVCAGISYS ALPMYLGELA PKNLRGMVGT VTEVFVIVGV 180
  181 FLAQIFSLQA ILGNPAGWPV LLALTGVPAL LQLLTLPFFP ESPRYSLIQK GDEATARQAL 240
  241 RRLRGHTDME AELEDMRAEA RAERAEGHLS VLHLCALRSL RWQLLSIIVL MAGQQLSGIN 300
  301 AVNYYADTIY TSAGVEAAHS QYVTVGSGVV NIVMTITSAV LVERLGRRHL LLAGYGICGS 360
  361 ACLVLTVVLL FQNRVPELSY LGIICVFAYI AGHSIGPSPV PPVVRTEIFL QSSRRAAFMV 420
  421 DGAVHWLTNF IIGFLFPSIQ EAIGAYSFII FAGICLLTAI YIYVVIPETK GKTFVEINRI 480
  481 FAKRNRVKLP EEKEETIDAG PPTASPAKET SF