YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pop-1
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEELGDEV KVFRRDEDAD DDPMISGETS EQQLADDKKE AVMEAELDGA GRNPSIDVLK  60
   61 SAFPKVEPMS PSFPGLMSHF SPGYSAAALP MFMPLFMNPY AAALRSPSLM FPMGAMSPTF 120
  121 PMFPPSPVYG AAIAAAAAKQ HFENMAPLNM RAGHPMNQMG MPPYMHPSSM APQNVDRRAQ 180
  181 GGGKAKKDDH VKKPLNAFMW FMKENRKALL EEIGNNEKQS AELNKELGKR WHDLSKEEQA 240
  241 KYFEMAKKDK ETHKERYPEW SARENYAVNK KKTKKRRDKS IPSENNDQKK CRARFGVNNT 300
  301 EMWCKFCKRK KKCEYATDRS GGSDITDSQD GRGTSGAYSS SSESPSPKAN AGIALTTQQQ 360
  361 QAAMMHTMLM QMRLGSTTGA STHVPSPLAS SSAGRSPLDA NASDSESDVE EEEDEQIDPT 420
  421 VMQQTHDMLM QESMCTI

Type	Start	End	Confidence
Cytoplasmic	1	79	0.66
Transmembrane Helix	80	102	0.68
Non-Cytoplasmic	103	437	0.53