YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mom-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.60
Transmembrane Helix	54	73	0.75
Non-Cytoplasmic	74	91	0.62
Transmembrane Helix	92	117	0.75
Cytoplasmic	118	125	0.85
Transmembrane Helix	126	145	0.86
Non-Cytoplasmic	146	165	0.79
Transmembrane Helix	166	185	0.84
Cytoplasmic	186	200	0.87
Transmembrane Helix	201	223	0.90
Non-Cytoplasmic	224	243	0.86
Transmembrane Helix	244	267	0.85
Cytoplasmic	268	301	0.87
Transmembrane Helix	302	321	0.84
Non-Cytoplasmic	322	326	0.65
Transmembrane Helix	327	344	0.92
Cytoplasmic	345	380	0.95
Transmembrane Helix	381	402	0.90
Non-Cytoplasmic	403	419	0.92
Transmembrane Helix	420	439	0.92
Cytoplasmic	440	442	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNGHGYEEF ELLEDGSLGE CSTQVANATF LTISKLICLV VAFKFIKHIP ISTTVRVYVH  60
   61 VFASTFTVMW FSRNHLQSAI IYNMFSLISL ALAIKQFSGY IILAGNISLL IALQNFCRHY 120
  121 RSEDYFLSIR GILMIHIMRL TTVAFNLEKA NSNKFRFVQF SSYVEYIYFP PFIIFGPYLS 180
  181 FEQFFKMRDK KWTGSENELG FIIQSLLAIF NAITLAIISS CHFEFFEPSS QFMEDALTAM 240
  241 SFRFSHYFVC LSTQAFVLML GSDVVVANPL NIEFSRSTLQ TVSEWNKPFH TFLHENIFKR 300
  301 RLFNSTACNV FFTFAVSSLL HGLDFQMTIT LLALGFIAYS ETVFRKRLSA RYSMCVAAKA 360
  361 CPVRSNSLSC KHRHSNKTGR ALIINLFFLM LSMYHLVFTG MTFTDDYSAI GYPFDHAWKI 420
  421 WGSHYYSSFM ISFLFLALSK II