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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE25938
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWVPLVLLP LIASAATTYQ HRQTYSSLQC RVNDPLSCNQ AKSEVCVFVN GQYRCECPVG  60
   61 VSRLADGRCL VVNECARPSL NACHKDAQCV DLAEGYTCRC NSGFADTSPD KVNKPGRQCQ 120
  121 KTTNECGAKQ TYGVDCDENA ACVDTPEGFQ CVCQPGYADV STSISKLPGR KCVESVNECT 180
  181 NGEADCSNNA DCFDRADGYE CKCRPGFVDA SPNVDKYPGR VCNKPKAPEY YGQQSRQPQC 240
  241 SEGSGCGPNE ECRFNTAGEK VCQCRRGSVQ QSNGVCKVFS QCEQANECDR NAFCSNTYDG 300
  301 PKCQCKDGFL DVSPDPVRLP GRKCQQVRNE CADGSHDCSH QAACQDTPTG YICSCNSNCI 360
  361 DVSSRYNLPP GRKCSVAANQ CSDKSLNSCD ENADCVQLPD GYTCKCFAGY VDVSSNANLP 420
  421 PGRVCTLSTA CPAQPTDLVF LIDGSGSIGS YVFQTEVLRF LAEFTELFDI APQKTRVSVV 480
  481 QYSDQIRHEF GLDNYSDRKS LQNAIRNIEY LTGLTRTGAA IEHVANEAFS ERRGARPVGQ 540
  541 VSRVAIVITD GRSQDNVTRP SDNARRQDIQ LFAVGVTNHV LDAELEEISG SKDRTFHVSG 600
  601 FEDLNTRLRS AIQRVACPHQ NNEDTYNKGP CDPSNHNGCD RSLNQVCQQK NGKFVCACPA 660
  661 GFDIHPVTKV CGGDICNPEI ATSCPDPEIC EKTPFGNWRC TCPADLGWRD RLTGVCKIGE 720
  721 KPVQTSESND ECSPNDVHSC PANSKCEKGA GGEFICKCDA GFQRNGRTNK CEAPGTCDPR 780
  781 MPDSCDARKK EKCLPDGRGA FACMCDRHHK RHPVTDICLI DECAAGVADC DPNAKCTDTD 840
  841 ESYICTCNEG FLDKSPEQNK KPGRVCSKQR NECLDGTHNC SMNADCIDLP DGFLCRCKED 900
  901 FVDISPNPNA FGGIDCRALV NECLITGGHN CHEHAICIDT RDSYKCQCKE GYVDHDELRN 960
  961 PGRTCKKLNQ ICESGKHECD KNARCVEKGA NDYECVCNAG FIDKSPLTHR PGRKCVEPIC1020
 1021 SDDSKHDCHS AAICEENDSV PEKYTCKCRD GYLDVGAVMG GGKSGRECKE LVNECLSASL1080
 1081 NSCDAAATCI DLDDGYTCKC PLGSKDESPV PKLPGRSCKG LVNECNIPHL NNCSHFATCI1140
 1141 DLEEGYECKC KPEYHDQKPE QPGTECKFII NECLAENLND CSPNAMCIDK IDGYDCKCKA1200
 1201 PFQDEMPSNP GRICRFDECA DPKDNDCDKH ALCIDTDDSY TCQCKEGFFD EISDPKKPGR1260
 1261 VCIEVGLVIE PQNQSEDPTT PDPNTIKCGN GLCHLDLGEV CVGGATCSCR PGESRDNEKE1320
 1321 KCVPTTSIPL VVRVMEYDGE PIQYRTDYSK PDTQAHIEIV DAVKKSVGKI IGKTDVAPRF1380
 1381 VTTDVNYITN PKVQNSEWDK GLLGNVSVHL AGKEEVDKCR FYEQFAEIVR EMGGRVDRIK1440
 1441 LSDDADLDPC KKEEEKKGIP CGNTFCSIEL GEECIAGKIC GCPKGQKRKD ANSPCRAVES1500
 1501 WNLPLYVIRD GHEKITYSPS LSNPLNDDHK DLVSRFESGV AQSYDKTPLK GAFVTAEVNE1560
 1561 IENPESRKKS WDTGILYNFT SHFVKGSVAE PASVFTDLID YIQKRNDFEV GKSKLFISPE1620
 1621 QLNPFSNCYH SDCHPDAICK EVGKGYTCTC PDGFRDLNPS RPGRNCLSYR GVNECEKPEL1680
 1681 NECSPHARCI DLDYLYKCEC IRPYVNSAVG DALPGSVCSI DYCQDVNYCP LNSTCVNVDE1740
 1741 QTYDGQARCD CKPGFVDLRK SGHLSEAGLG ESICRRQSDI DECALGLHNC SAAAICIDKK1800
 1801 IGYECQCQEG YEDGNPSQPG RICAASLCGL CNGHGDCIHD ALSSNVTCAC LDGYTGQFCE1860
 1861 TAPSNLPLIL MTLLALLFLL LTLLCCLYMC ARCRCFGARG RSEGSASGQE ILGSDYYTIP1920
 1921 RAKLARPLYG DEMGDDHAGA LAAYLDDGAS ISSDGSIEEI ERRVTTDVTT REVRTTTVRD1980
 1981 DDGNIISQSQ TISHGNPHET DTEQYGMISS DHYKTSASEA MDAAMSTSAS GAAYNQSSGA2040
 2041 MMSSASGHKS AYNQGYASDS EDSDAGHAVY DRTTRTNQSH DFEPGADPRT GTERSKREFV2100
 2101 TTTKAEEVNY F

YRC Informatics Platform - Version 3.0
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