YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	59	0.91
Non-Cytoplasmic	60	67	0.84
Transmembrane Helix	68	88	0.89
Cytoplasmic	89	105	0.91
Transmembrane Helix	106	127	0.91
Non-Cytoplasmic	128	161	0.52
Transmembrane Helix	162	182	0.84
Cytoplasmic	183	200	0.58
Transmembrane Helix	201	222	0.86
Non-Cytoplasmic	223	240	0.62
Transmembrane Helix	241	263	0.88
Cytoplasmic	264	279	0.62
Transmembrane Helix	280	303	0.86
Non-Cytoplasmic	304	307	0.59
Transmembrane Helix	308	329	0.88
Cytoplasmic	330	335	0.59
Transmembrane Helix	336	357	0.77
Non-Cytoplasmic	358	387	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMELESETQE LHLHVNGEPE GKFSTEERSH KYSWRLRVSL YVTLLLAGET IATLLGRLYY  60
   61 EKGGKSTWLE TLVQLVGFPL TLPCYYYLKP EPSKTKTITK KTTSSFLTLS LVYIGLGLLV 120
  121 AGHCILYSFG LLYLPVSTFS LISASQLAFN AVFSYFLNSQ KITPFILNSL VLLTISSTLL 180
  181 VIQHEPESPS STSKSAAKSK YVIGYICAVG SSAGYSLVLS LTDYAFEKIL KKYTFKAILD 240
  241 MATYPSMVAT CVVVVGLFGS GGWKKLSTEM EEFQLGKSSY ILINIGSTIS WQACLIGSVG 300
  301 LIIEVSSLFS NVISTLCLPV VPVLAVVFFR DEMSGIKLVA MFLAIWGFVS YGYQHYVNDR 360
  361 KPEEDQELPQ SKEEEEQKQV DTIHVQA