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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cnt-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKSIATSS TASSSSSHHQ EHTVTELIMF FTSEEPPEPE PFSRSTEKSG IRTSKVITRT  60
   61 ITISAETKLK MDLLEEQRRE KRVKLEIEKS RIRAENLQRM QEISSEPKTR GSKRSLMRRA 120
  121 AKRTKGRISS LLIRDSSVDS GSITDKALKD KKRGLSLEWE VKDQGRFAES FSDSRLMEMF 180
  181 QHPSGMPIEP DVMMEGYLYK RSSNAFKTWN RRWFQIKDKQ LLYSHRSTDL EPATIMEENL 240
  241 RICLVRPAPS NIDRIGCFEL VTPTRIHLLQ ADSESLCQDW MRALQRTILA LHEGDSVDVA 300
  301 STSPRNKTTS MSSGVTLTSA NAISPLSNAM DVTKGRSVSD PASTYTSANT SSISTAAGFS 360
  361 SSTTAFEQVR RVPGNEVCAD CGSPAPKWVS INLGVVLCIE CSGAHRSLGV QTSKVRSLCM 420
  421 DSIDNELRDV LLALGNRQVN EIFLAHLPPA DSIVPPQINE KSARPAREAW IKAKYVERRF 480
  481 AVAEDTRARS SATNRQEHLK HKTSIGGNSS SNGVNRSSSY ADVQDAESGG LLDADPWSAD 540
  541 LSVPVPTASK RLSACGSDTN LDAIGSSSID TKTVEWDSVK EACECGDLLA LMTAYAQGFD 600
  601 LNALHNGTTA LHIATRNGQT AAVEFLLLNG AKINMLDEKL NTPLHLAAKE GHTLPVCQLL 660
  661 KRGADSNLAN VDSKTPLDIA MECTHADIVT LFRVTIMRND FNADFNNPMD ETVEAVISDI 720
  721 ARRAATEKEQ KKTESLKSTS DI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle