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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE40847
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKRRSEDV DAMVIATSPI KIKVEQFIEE TSSMDVYIPA LDRFAEDTSM LGFRYLHTRY  60
   61 KTWFRVLWGF VVVFFIGLTF YQVFERVTYY FIKNPLTTRR SYETLPNMYF PTIGVCNKMQ 120
  121 IKASSVASKN PDLLRGMCSV LDESSSNSSR FDELDKFDDV DILSLYRNSF QSADDLFVSC 180
  181 EFGKSGSCQD EIRPIYTPFG LCYSVSPNKT ILRPGPETTL SLVLNLEVHE IIPGTVVEPG 240
  241 VVLSIYDGAS SLSHYSEGIH LEAGKVVTIP VNEVRKLRLH ESSCGSTKME SFSEKEYSKA 300
  301 ACEWSVSVKQ IEKECGCIPI RNPIYRGVFD NKNDPLNNST EIPKKKYKKW KKRNIPRCTL 360
  361 RQEIECVQEK LNIRPHIDDS ICPDDCDDIS FSSIVFGGKL SSSEIVSMLP SDWEDTKEKR 420
  421 VADYQKVLEV IPNKMIPVVR NVQQLADELQ LFVKEASEIF GVSDNFHDVK CLSLDGRTYE 480
  481 SFINQFYSYE PTWERITTQV YSEYLKKKIL IFRYLQHSLA RELNSTALCL GLFLTEKGEI 540
  541 DDTVTPVVNM TLASISLLQL GQIENSLGKA NFNYGLTMMH ESTRRVVLGL GKHAKAKSSI 600
  601 PHILSAHPLI TEVRDCVTKM YENLERVEEI AEDCRIIFKN RYTPLIEASN VHTKTNPNSE 660
  661 SFKLYTEAMK KVLAKLQILK TRVRMSEWKD FKIDLKEFES SYREIAKDHV EIEEMLKLRK 720
  721 TMVTDIPALA NELSETFLAA TESRRKFAVL TGIAADESFS DKFSNFSKCL DELHEKAPNL 780
  781 KKTRFIRGEW LSRLRNQVLM AQSYSPTPQY DVVNLLHIKF YFAHFKQETI LQERSYNLFL 840
  841 LLAEIGGTIG LYVGATLLTA AETLVFLCER KKSNIFLKPQ FI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle