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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: mca-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRRGHTYD EDAKEFGCSL GDLRGLMEAR GAEAIVRLST EHEGVEGLCK KLKTDSLVGL  60
   61 NGEQADLDRR RHVYGANTIP PAKSKGFVRL VLDACKDPTL VILVLSGFIN LALSFYEPTS 120
  121 AAEDATQHLV NATTAAILAN GTFMSTTEAP SEGHGTAWIE GVAILLCVIV VVLVTAVNDY 180
  181 SKERQFRSLQ EKIETGQKFS VIRNGEAIDV PVSDLVVGDI ARVKYGDLLP ADGFLIQSND 240
  241 LKIDESSLTG ESDHIKKSIE SDPVLLSGTY AMEGSGKMLI TAVGVNSQTG IIMTLLGAGK 300
  301 AGIGDDDSTS TSSSSSSSSS SSGSSSNGSS DSSKSGDDDL TAKSVLQAKL SKLALQIIYC 360
  361 GTTIAIIALI VLVTRFCLDH YVFEKNEFSL VDIQMFVKFF IIAVTILVIS IPEGLPLAIA 420
  421 LALTYSVRKM MHDNNLVRHL DACETMGNAT SICSDKTGTL TTNRMTVVQS YINGNHYTSQ 480
  481 EAQPHGANLP GSTGPILMEA ISVNCAYNSM IVEPTKAGEQ IQQLGNKTEC GLLGFVNRLG 540
  541 GDYAAIRKKF PEHDLTKVYT FNSSRKCMMT VVPYAENGQN IGYRVYCKGA SEIVLGRCTY 600
  601 LIGSDGKPHQ LTGDRLKEIT STIIHEMANS GLRTICVAYK TIIKKGTRDV EKTEIEFAED 660
  661 SDIDWDDEDA MYQNFTGIAI CGIQDPVRPE VPVAISKCKK AGITVRMVTG DNIMTARAIA 720
  721 MSCKILEPGE DFLALEGKEF NERIRDENGK VSQAKLDEIW PRLRVLARAQ PADKYTLVKG 780
  781 IIDSKATPQR EIVAVTGDGT NDGPALKKAD VGFAMGIAGT DVAKEASDII LTDDNFTSIV 840
  841 KAVMWGRNVY DSISKFLQFQ LTVNVVAVIT AFVGAVTVSD SPLKAVHMLW INLIMDTLAS 900
  901 LALATEQPTD ELLERKPYGR KKSLISRTMV KNILCHALYQ LIIIFVIFFY GDTIFGIKTG 960
  961 LYAPLFAPPS QHFTLVFNAF VMMTVFNEIN ARKVHGERNV FKGLASNRVF CVIWVTTFIA1020
 1021 QIIIVQFGGA WFSTAPLTLQ QWIVCLVLGF STLIWGQIVA TIPSKKLPKA WKVGKGEVQP1080
 1081 ANLHINGDYN VRARSRAVTL RRSGKSLWVR GMFIIGNHLR VLRAFGMEKS EKAAFGRTAP1140
 1141 AMTAEAAERW RASYRKYRHQ KHQEKKATAE TAESVKSADW AKEQKEKKKT FKQIKQVARG1200
 1201 KSLDKDSKKH HKKRKDQTNV DMEDIELN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle