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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: unc-40
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRHFGFIL IILTVYLSST HATTRKHHRR SIDNDARNLG FQFVMEPRRN VTVMESSSHL  60
   61 LECSYVLAHE RLVHDVRIEW KRDGVLLSER TSSRIKVMSN GSLWIESVSS AEEGTYQCAV 120
  121 HVTTKSDQTS DTWTFLSRKA TLRLADLAKF ELQAIDRTLA KGQPTAFHCL INSKPTPTAV 180
  181 WLHNDEPIVN GGEYHILPVS NTLEISSTQS RHEGTYRCTV EGAGKRRSSQ TARLTVTTET 240
  241 VSNELVFITT PRLQVVEQGD EFLLECLVAS LIRPQVRWLK DSRQIIVDGV RIRRVGVSSI 300
  301 LVSRASIEDT GLYTCRASNN DDSIDRAVSV EVRAPPRITT RPTTKVAVET ADVELECGTA 360
  361 AARPEARVNW YKNGEAIIGS EYFVIEPNRL RILGVVRADQ AIYQCIAEND VGSEQASAQL 420
  421 LVDAPDSSSV AASSGVPMTS SAPLGLRSTS SGSRFINVEW DPPVQRNGNI MRYHIFYKDN 480
  481 LIDRERMINS SSTSATLTSL QPSTMYLIRV TAENEAGMGK FSDSLKVTTN KEQAVPGKVA 540
  541 SLTTTATGPE TIDIRWSPPS GGQPALRYKI FYSHDPLEKN EKETLITTST THYTLHGMDK 600
  601 YTGYQIRIEA EGSNGSGLSS DTVKVRTQSD EPSAPPVNIQ AEADSSTSVR VSWDEPEEES 660
  661 VNGEITGYRL KYKTKARGAK GNTLVIDATA REYTMGNLEP NTQYLIRMAV VNHNGTGPFS 720
  721 DWVSIDTPGQ DKEERTLGAP REIRPHAGID YILVSWLPPA DEQNLVRGYQ IGWGLSVPDT 780
  781 ETIRVTASTT QYKIARLHSE RDYVISLRAF NNLGSGFPIY ETVRTLSRET PSHFNEDSDS 840
  841 DDSDVGSSES TPVGVRAEAI SATSIRVMWT ESDETAFNTQ YTVRYSTAVD GNQHRYVNST 900
  901 ETWATVEGLR PATEYEFAVR AVASNGQLST WSMATRNRTL AAPPSSAPRD LTVLPAESGD 960
  961 PHSSSLHWQP PKYSNGEIEE YLVFYTDRAS LADKDWTINY VAGDKLSHQV SNLLPKANYF1020
 1021 FKIQARNEKG HGPFSSVVGY TPSGGAILSG KDRHNARGHG SAASGDTVSL VDQLQSLLHS1080
 1081 NPLYLILLAA FALILILTLI LIIMCCWKRS SGGGRKNGYQ SGKKTSAGAG SGGGIGGLGG1140
 1141 PPNDLWINGT GSHMRAGASD YMVDGLATAH LTAADIESPT PRYHHLQGQG TLTRSYHQSS1200
 1201 QSLEGRQRTP QVVYTGTGRH QPIQRIDFES PYGSSSAIGS ASTPPLPMQA PPSGPPTVID1260
 1261 GYRTLRGTPP NSSAANALRS FTQLAGATPP PPHSAASSSS RPTIIAAGGR QVPVGRATAQ1320
 1321 PRVNVANIYS PFASCSASSD AGESDKKSGE CMEMRETTPI KSNTAGSSNG EKMNTNMNPS1380
 1381 HSAEDLNAHL ENLDTMLDDL QQLQHNLHFE TSMDK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle