YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLREQEHEP FFIKIDGKWC QIDDAVLRSH PGGSAITTYK NMDATTVFHT FHTGSKEAYQ  60
   61 WLTELKKECP TQEPEIPDIK DDPIKGIDDV NMGTFNISEK RSAQINKSFT DLRMRVRAEG 120
  121 LMDGSPLFYI RKILETIFTI LFAFYLQYHT YYLPSAILMG VAWQQLGWLI HEFAHHQLFK 180
  181 NRYYNDLASY FVGNFLQGFS SGGWKEQHNV HHAATNVVGR DGDLDLVPFY ATVAEHLNNY 240
  241 SQDSWVMTLF RWQHVHWTFM LPFLRLSWLL QSIIFVSQMP THYYDYYRNT AIYEQVGLSL 300
  301 HWAWSLGQLY FLPDWSTRIM FFLVSHLVGG FLLSHVVTFN HYSVEKFALS SNIMSNYACL 360
  361 QIMTTRNMRP GRFIDWLWGG LNYQIEHHLF PTMPRHNLNT VMPLVKEFAA ANGLPYMVDD 420
  421 YFTGFWLEIE QFRNIANVAA KLTKKIA

Type	Start	End	Confidence
Cytoplasmic	1	127	0.92
Transmembrane Helix	128	146	0.73
Non-Cytoplasmic	147	151	0.55
Transmembrane Helix	152	171	0.72
Cytoplasmic	172	254	0.79
Transmembrane Helix	255	276	0.85
Non-Cytoplasmic	277	318	0.52
Transmembrane Helix	319	339	0.90
Cytoplasmic	340	447	0.66