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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: avr-15
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRLRRGFI LFPQLFLLFV SISSIFLFVL VECKPPKSLN RMRSKGTYNA AAFNSPSMIN  60
   61 NGLLLAGFEN NDTSRETRES YEEYKDDIDH LLEGDLTFYD EGADTAAGDV VITSETPVEK 120
  121 HKEVHFKNEP EEEEIGKEDD GGGEAEEGEY EEENGSDAEE EEESPEKVEP ATSTITTEAQ 180
  181 TTTTPEEVTQ DVSDNIEDDE DARPKSEEHS PKHAASSSDL FEDDDQSTTL ESIARLSAPA 240
  241 HVPIEQPQTS DTEILEHLLT RGYDHRVRPP GEDGTIHGGP VVVSVNMLLR SISKIDNVNM 300
  301 EYSVQLTFRE SWVDKRLSFG VKGDAQPDFL ILTAGQEIWM PDSFFQNEKQ AYKHMIDKPN 360
  361 VLIRVHKDGT ILYSVRISLV LSCPMHLQYY PMDVQQCFID LASYAYTTKD IEYVWKEETP 420
  421 VQLKAGLSSS LPSFQLTNTS TTYCTSKTNT GSYSCLRTII QLRRQFSYYL LQLYIPSCML 480
  481 VIVSWVSFWI DRTAVPARVT LGVTTLLTMT TQSSGINAKL PPVAYIKAID VWIGACMTFI 540
  541 FCALLEFAWV TYIANKQDAN KRARTEREKA ELPFLQNSHN DVWVPREVAE QEREVMTVRM 600
  601 NRRQTNSVWK WIKTKTEWND KSKRADLISR VMFPVLFLTF NISYWTHYGQ YGVAIST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle