YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pept-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.59
Transmembrane Helix	113	134	0.87
Non-Cytoplasmic	135	147	0.73
Transmembrane Helix	148	166	0.84
Cytoplasmic	167	180	0.82
Transmembrane Helix	181	203	0.89
Non-Cytoplasmic	204	220	0.83
Transmembrane Helix	221	243	0.90
Cytoplasmic	244	317	0.99
Transmembrane Helix	318	336	0.95
Non-Cytoplasmic	337	367	0.95
Transmembrane Helix	368	389	0.91
Cytoplasmic	390	399	0.84
Transmembrane Helix	400	419	0.93
Non-Cytoplasmic	420	698	0.98
Transmembrane Helix	699	719	0.86
Cytoplasmic	720	735	0.75
Transmembrane Helix	736	757	0.93
Non-Cytoplasmic	758	764	0.82
Transmembrane Helix	765	787	0.92
Cytoplasmic	788	835	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYSESRSES VSSKGKTSYG HELETVPLPE KKIYTTWPDM IRHWPKTTLC IVSNEFCERF  60
   61 SYYGMRTVLT FYLLNVLKFT DSQSTIFFNG FTVLCYTTPL LGSIVADGYI GKFWTIFSVS 120
  121 ILYAIGQVVL ALASTKNFQS SVHPWMDLSG LLIIAFGTGG IKPCVSAFGG DQFELGQERM 180
  181 LSLFFSMFYF SINAGSMIST FISPIFRSQP CLGQDSCYPM AFGIPAILMI VATLVFMGGS 240
  241 FWYKKNPPKD NVFGEVSRLM FRAVGNKMKS GSTPKEHWLL HYLTTHDCAL DAKCLELQAE 300
  301 KRNKNLCQKK KFIDDVRSLL RVLVMFLPVP MFWALYDQQG SVWLIQAIQM DCRLSDTLLL 360
  361 LPDQMQTLNA VLILLFIPLF QVIIYPVAAK CVRLTPLRKM VTGGLLASLA FLITGFVQLQ 420
  421 VNTTLPTLPE EGEASISFWN QFETDCTITV MSGIHKRVLP HDKYLHEDKK NKSGIYNLFT 480
  481 TKSPAKGNGD WTLTYDLSYD GACGDTSKLE KTVKVTAKSK KIIYVGVGSF GYYQNTANTD 540
  541 KPTDGTGEFS MGIVTVFNSS YGGNFAMCRQ NTSDFDVNHP CNPRHPADFY FWETDYNSHT 600
  601 DDRDQNATIT GSLSSQPAVT YKQKSVKPGY WQLYYLLNTP KDVDRQTYNK TATLVAPTNY 660
  661 GFHRVKQGGV FIYALTGTYE NPKIHELQIV QSNSVSILWQ IPQIVVITAA EILFSITGYE 720
  721 FAYSQSAPSM KALVQALWLL TTAAGDSIIV VITILNLFEN MAVEFFVYAA AMFVVIAIFA 780
  781 LLSIFYYTYN YYTTDEEDGE IGVDDEEEIE DHNPRYSIDN KGFHPDEKDT FDMHF