YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gar-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVASVLLAL FMLFLSIVTV IGNLAVLLSY YLDKNIRQPT NYFIFSLAIS DLLIGLEGIP  60
   61 VYTAFYLNNN EWIWGDVLCD LWLSIDYIVC LASIYTVLGI TVDRYYSVKK PATYRNWRTP 120
  121 GRVVLIIIFI WLVPSILFSV SIFGYGTFTG TGRILKETEC YVQFMTNPYL NMGMYISYYW 180
  181 TTLFVMLYLY WGIYRAAKKL ALKSDQKTKR LALLTEMRRP EVSVRTSDAG NSSSDSPNDT 240
  241 SNSSKCFRTA PPTTTVQTTQ TNVGTPPPVF RNHMTLHNNN MDFTKDNEIV RPPTPPDDNT 300
  301 YSNPNFSMIS EQLTNGFSRQ EPSSVIERES TAPCVSPEPS HASLENEFNE NHHAHFKPEL 360
  361 SLPFIDADSV SSMVGHDDLR RAMSIRISRS VSMQGTARAT PVIEIVENLE EALKICENLE 420
  421 ELREDENKNE EEKQKNGLEN GGMNHVIIAN DEQQPSTSKE SEQKEEMTPE NHDPNEVKVP 480
  481 LIAVSRVESV KSTAGGKVRR LITQMRSHSI RSKRKANKNK VSTCSPKSTT SLLLPPSTSS 540
  541 TTRERTRHPV TITLQFQSVL SALNFFQRKK VTREYKSRSE NRARKALRTI TFILGSFIIL 600
  601 WTPFYVLATI YGFCETCKAS PSFNTLYTIS YYLCYMNSPL NPFCYAMANQ QFKKTLTRIF 660
  661 KGDFRRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	31	0.91
Cytoplasmic	32	41	0.88
Transmembrane Helix	42	64	0.91
Non-Cytoplasmic	65	82	0.90
Transmembrane Helix	83	102	0.95
Cytoplasmic	103	122	0.88
Transmembrane Helix	123	145	0.92
Non-Cytoplasmic	146	174	0.94
Transmembrane Helix	175	194	0.94
Cytoplasmic	195	585	0.99
Transmembrane Helix	586	608	0.86
Non-Cytoplasmic	609	628	0.84
Transmembrane Helix	629	648	0.58
Cytoplasmic	649	667	0.59