YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sel-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	73	0.88
Non-Cytoplasmic	74	101	0.94
Transmembrane Helix	102	123	0.93
Cytoplasmic	124	129	0.92
Transmembrane Helix	130	151	0.92
Non-Cytoplasmic	152	161	0.81
Transmembrane Helix	162	182	0.92
Cytoplasmic	183	189	0.81
Transmembrane Helix	190	210	0.86
Non-Cytoplasmic	211	214	0.76
Transmembrane Helix	215	233	0.88
Cytoplasmic	234	359	0.84
Transmembrane Helix	360	377	0.47
Non-Cytoplasmic	378	383	0.51
Transmembrane Helix	384	405	0.92
Cytoplasmic	406	410	0.55
Transmembrane Helix	411	431	0.88
Non-Cytoplasmic	432	444	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTRRQQEG GGADAETHTV YGTNLITNRN SQEDENVVEE AELKYGASHV IHLFVPVSLC  60
   61 MALVVFTMNT ITFYSQNNGR HLLYTPFVRE TDSIVEKGLM SLGNALVMLC VVVLMTVLLI 120
  121 VFYKYKFYKL IHGWLIVSSF LLLFLFTTIY VQEVLKSFDV SPSALLVLFG LGNYGVLGMM 180
  181 CIHWKGPLRL QQFYLITMSA LMALVFIKYL PEWTVWFVLF VISVWDLVAV LTPKGPLRYL 240
  241 VETAQERNEP IFPALIYSSG VIYPYVLVTA VENTTDPREP TSSDSNTSTA FPGEASCSSE 300
  301 TPKRPKVKRI PQKVQIESNT TASTTQNSGV RVERELAAER PTVQDANFHR HEEEERGVKL 360
  361 GLGDFIFYSV LLGKASSYFD WNTTIACYVA ILIGLCFTLV LLAVFKRALP ALPISIFSGL 420
  421 IFYFCTRWII TPFVTQVSQK CLLY