YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ced-7
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	43	0.77
Non-Cytoplasmic	44	255	0.85
Transmembrane Helix	256	276	0.90
Cytoplasmic	277	285	0.70
Transmembrane Helix	286	306	0.65
Non-Cytoplasmic	307	308	0.43
Transmembrane Helix	309	328	0.79
Cytoplasmic	329	334	0.52
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	362	0.62
Transmembrane Helix	363	382	0.87
Cytoplasmic	383	390	0.62
Transmembrane Helix	391	411	0.82
Non-Cytoplasmic	412	432	0.65
Transmembrane Helix	433	456	0.88
Cytoplasmic	457	946	0.69
Transmembrane Helix	947	969	0.71
Non-Cytoplasmic	970	1110	0.89
Transmembrane Helix	1111	1133	0.93
Cytoplasmic	1134	1153	0.73
Transmembrane Helix	1154	1182	0.78
Non-Cytoplasmic	1183	1189	0.53
Transmembrane Helix	1190	1212	0.90
Cytoplasmic	1213	1221	0.62
Transmembrane Helix	1222	1244	0.94
Non-Cytoplasmic	1245	1252	0.65
Transmembrane Helix	1253	1279	0.80
Cytoplasmic	1280	1294	0.64
Transmembrane Helix	1295	1315	0.92
Non-Cytoplasmic	1316	1691	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLRQFSLL LWKDWVLLRR NKVWTLFELI IPCLLLGPLV YLVVKNADHT SSPENIYDNF  60
   61 QVKGTVEDVF LESNFIKPIY KRWCLRSDVV VGYTSKDAAA KRTVDDLMKK FAERFQSAKL 120
  121 KLSVKNESSE EQLLTVLRND LPMLNETFCA INSYAAGVVF DEVDVTNKKL NYRILLGKTP 180
  181 EETWHLTETS YNPYGPSSGR YSRIPSSPPY WTSAFLTFQH AIESSFLSSV QSGAPDLPIT 240
  241 LRGLPEPRYK TSSVSAFIDF FPFIWAFVTF INVIHITREI AAENHAVKPY LTAMGLSTFM 300
  301 FYAAHVVMAF LKFFVIFLCS IIPLTFVMEF VSPAALIVTV LMYGLGAVIF GAFVASFFNN 360
  361 TNSAIKAILV AWGAMIGISY KLRPELDQIS SCFLYGLNIN GAFALAVEAI SDYMRREREL 420
  421 NLTNMFNDSS LHFSLGWALV MMIVDILWMS IGALVVDHIR TSADFSLRTL FDFEAPEDDE 480
  481 NQTDGVTAQN TRINEQMNPM ASTSLNPPNA DSDSLLEGST EADGARDTAR ADIIVRNLVK 540
  541 IWSTTGERAV DGLSLRAVRG QCSILLGHNG AGKSTTFSSI AGIIRPTNGR ITICGYDVGN 600
  601 EPGETRRHIG MCPQYNPLYD QLTVSEHLKL VYGLKGAREK DFKQDMKRLL SDVKLDFKEN 660
  661 EKAVNLSGGM KRKLCVCMAL IGDSEVVLLD EPTAGMDPGA RQDVQKLVER EKANRTILLT 720
  721 THYMDEAERL GDWVFIMSHG KLVASGTNQY LKQKFGTGYL LTVVLDHNGD KRKMAVILTD 780
  781 VCTHYVKEAE RGEMHGQQIE IILPEARKKE FVPLFQALEA IQDRNYRSNV FDNMPNTLKS 840
  841 QLATLEMRSF GLSLNTLEQV FITIGDKVDK AIASRQNSRI SHNSRNASEP SLKPAGYDTQ 900
  901 SSTKSADSYQ KLMDSQARGP EKSGVAKMVA QFISIMRKKF LYSRRNWAQL FTQVLIPIIL 960
  961 LGLVGSLTTL KSNNTDQFSV RSLTPSGIEP SKVVWRFENG TIPEEAANFE KILRKSGGFE1020
 1021 VLNYNTKNPL PNITKSLIGE MPPATIGMTM NSDNLEALFN MRYYHVLPTL ISMINRARLT1080
 1081 GTVDAEISSG VFLYSKSTSN SNLLPSQLID VLLAPMLILI FAMVTSTFVM FLIEERTCQF1140
 1141 AHQQFLTGIS PITFYSASLI YDGILYSLIC LIFLFMFLAF HWMYDHLAIV ILFWFLYFFS1200
 1201 SVPFIYAVSF LFQSPSKANV LLIIWQVVIS GAALLAVFLI FMIFNIDEWL KSILVNIFMF1260
 1261 LLPSYAFGSA IITINTYGMI LPSEELMNWD HCGKNAWLMG TFGVCSFALF VLLQFKFVRR1320
 1321 FLSQVWTVRR SSHNNVQPMM GDLPVCESVS EERERVHRVN SQNSALVIKD LTKTFGRFTA1380
 1381 VNELCLAVDQ KECFGLLGVN GAGKTTTFNI LTGQSFASSG EAMIGGRDVT ELISIGYCPQ1440
 1441 FDALMLDLTG RESLEILAQM HGFENYKAKA ELILECVGMI AHADKLVRFY SGGQKRKISV1500
 1501 GVALLAPTQM IILDEPTAGI DPKARREVWE LLLWCREHSN SALMLTSHSM DECEALCSRI1560
 1561 AVLNRGSLIA IGSSQELKSL YGNNYTMTLS LYEPNQRDMV VQLVQTRLPN SVLKTTSTNK1620
 1621 TLNLKWQIPK EKEDCWSAKF EMVQALAKDL GVKDFILAQS SLEETFLRLA GLDEDQLDTH1680
 1681 STVEISHSTH V