YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ced-7
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	43	0.77
Non-Cytoplasmic	44	255	0.85
Transmembrane Helix	256	276	0.90
Cytoplasmic	277	285	0.70
Transmembrane Helix	286	306	0.65
Non-Cytoplasmic	307	308	0.42
Transmembrane Helix	309	328	0.79
Cytoplasmic	329	334	0.51
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	362	0.60
Transmembrane Helix	363	382	0.87
Cytoplasmic	383	390	0.60
Transmembrane Helix	391	411	0.82
Non-Cytoplasmic	412	432	0.63
Transmembrane Helix	433	456	0.88
Cytoplasmic	457	946	0.67
Transmembrane Helix	947	970	0.71
Non-Cytoplasmic	971	1108	0.85
Transmembrane Helix	1109	1131	0.92
Cytoplasmic	1132	1151	0.71
Transmembrane Helix	1152	1180	0.78
Non-Cytoplasmic	1181	1187	0.51
Transmembrane Helix	1188	1210	0.90
Cytoplasmic	1211	1219	0.61
Transmembrane Helix	1220	1242	0.94
Non-Cytoplasmic	1243	1250	0.63
Transmembrane Helix	1251	1277	0.80
Cytoplasmic	1278	1292	0.63
Transmembrane Helix	1293	1313	0.92
Non-Cytoplasmic	1314	1689	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLRQFSLL LWKDWVLLRR NKVWTLFELI IPCLLLGPLV YLVVKNADHT SSPENIYDNF  60
   61 QVKGTVEDVF LESNFIKPIY KRWCLRSDVV VGYTSKDAAA KRTVDDLMKK FAERFQSAKL 120
  121 KLSVKNESSE EQLLTVLRND LPMLNETFCA INSYAAGVVF DEVDVTNKKL NYRILLGKTP 180
  181 EETWHLTETS YNPYGPSSGR YSRIPSSPPY WTSAFLTFQH AIESSFLSSV QSGAPDLPIT 240
  241 LRGLPEPRYK TSSVSAFIDF FPFIWAFVTF INVIHITREI AAENHAVKPY LTAMGLSTFM 300
  301 FYAAHVVMAF LKFFVIFLCS IIPLTFVMEF VSPAALIVTV LMYGLGAVIF GAFVASFFNN 360
  361 TNSAIKAILV AWGAMIGISY KLRPELDQIS SCFLYGLNIN GAFALAVEAI SDYMRREREL 420
  421 NLTNMFNDSS LHFSLGWALV MMIVDILWMS IGALVVDHIR TSADFSLRTL FDFEAPEDDE 480
  481 NQTDGVTAQN TRINEQMNPM ASTSLNPPNA DSDSLLEGST EADGARDTAR ADIIVRNLVK 540
  541 IWSTTGERAV DGLSLRAVRG QCSILLGHNG AGKSTTFSSI AGIIRPTNGR ITICGYDVGN 600
  601 EPGETRRHIG MCPQYNPLYD QLTVSEHLKL VYGLKGAREK DFKQDMKRLL SDVKLDFKEN 660
  661 EKAVNLSGGM KRKLCVCMAL IGDSEVVLLD EPTAGMDPGA RQDVQKLVER EKANRTILLT 720
  721 THYMDEAERL GDWVFIMSHG KLVASGTNQY LKQKFGTGYL LTVVLDHNGD KRKMAVILTD 780
  781 VCTHYVKEAE RGEMHGQQIE IILPEARKKE FVPLFQALEA IQDRNYRSNV FDNMPNTLKS 840
  841 QLATLEMRSF GLSLNTLEQV FITIGDKVDK AIASRQNSRI SHNSRNASEP SLKPAGYDTQ 900
  901 SSTKSADSYQ KLMDSQARGP EKSGVAKMVA QFISIMRKKF LYSRRNWAQL FTQVLIPIIL 960
  961 LGLVGSLTTL KSNNTDQFRS LTPSGIEPSK VVWRFENGTI PEEAANFEKI LRKSGGFEVL1020
 1021 NYNTKNPLPN ITKSLIGEMP PATIGMTMNS DNLEALFNMR YYHVLPTLIS MINRARLTGT1080
 1081 VDAEISSGVF LYSKSTSNSN LLPSQLIDVL LAPMLILIFA MVTSTFVMFL IEERTCQFAH1140
 1141 QQFLTGISPI TFYSASLIYD GILYSLICLI FLFMFLAFHW MYDHLAIVIL FWFLYFFSSV1200
 1201 PFIYAVSFLF QSPSKANVLL IIWQVVISGA ALLAVFLIFM IFNIDEWLKS ILVNIFMFLL1260
 1261 PSYAFGSAII TINTYGMILP SEELMNWDHC GKNAWLMGTF GVCSFALFVL LQFKFVRRFL1320
 1321 SQVWTVRRSS HNNVQPMMGD LPVCESVSEE RERVHRVNSQ NSALVIKDLT KTFGRFTAVN1380
 1381 ELCLAVDQKE CFGLLGVNGA GKTTTFNILT GQSFASSGEA MIGGRDVTEL ISIGYCPQFD1440
 1441 ALMLDLTGRE SLEILAQMHG FENYKAKAEL ILECVGMIAH ADKLVRFYSG GQKRKISVGV1500
 1501 ALLAPTQMII LDEPTAGIDP KARREVWELL LWCREHSNSA LMLTSHSMDE CEALCSRIAV1560
 1561 LNRGSLIAIG SSQELKSLYG NNYTMTLSLY EPNQRDMVVQ LVQTRLPNSV LKTTSTNKTL1620
 1621 NLKWQIPKEK EDCWSAKFEM VQALAKDLGV KDFILAQSSL EETFLRLAGL DEDQLDTHST1680
 1681 VEISHSTHV