YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-21
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.53
Transmembrane Helix	53	72	0.62
Cytoplasmic	73	292	0.95
Transmembrane Helix	293	315	0.93
Non-Cytoplasmic	316	322	0.77
Transmembrane Helix	323	344	0.94
Cytoplasmic	345	355	0.78
Transmembrane Helix	356	375	0.89
Non-Cytoplasmic	376	395	0.83
Transmembrane Helix	396	417	0.89
Cytoplasmic	418	425	0.79
Transmembrane Helix	426	445	0.92
Non-Cytoplasmic	446	482	0.83
Transmembrane Helix	483	505	0.85
Cytoplasmic	506	669	0.96
Transmembrane Helix	670	689	0.61
Non-Cytoplasmic	690	696	0.55
Transmembrane Helix	697	718	0.92
Cytoplasmic	719	723	0.59
Transmembrane Helix	724	745	0.91
Non-Cytoplasmic	746	751	0.60
Transmembrane Helix	752	773	0.83
Cytoplasmic	774	806	0.60
Transmembrane Helix	807	828	0.81
Non-Cytoplasmic	829	838	0.44
Transmembrane Helix	839	862	0.83
Cytoplasmic	863	909	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDELVHRP TVLSTTASAT SRPRHKTFEL LGPVNNISLA DMYKVCGKII GRFPIAFIIA  60
   61 TVIMCSGGLG TIGLELKDNV RDGYTPKNSL SRLENRLYRE FLSSEGDPVM TTVLMTAKDG 120
  121 GSMHRIKYLE EAQRQWLYIS KNLSADVGNG EFMKFGDFCG HYCQANDIIG YFLDAYKTKS 180
  181 ADPKMDGYQL NYPITTVMGY QLHLERNFFG VTVNQSDPVT NIQSMKVLTL PVLSEVRTFE 240
  241 DTDKLNKWEL AVYNYATGYS ALEGDDHLVE INVIGAEVVD TEMNKDAQKM VPYFIVGIVS 300
  301 MIIFIFCTVS ISASYYGYFS WRIGLIALAC LLVPILAILT AFGINNMLGN RTNSPMMIMP 360
  361 FLINGIGVND AFLTLQNWLQ HSPDLPSGKR LGYMLAEAGP SITTTTLTNV IVFLIGWMNP 420
  421 TEEMSIFCLG CAISLLLAYV YTLTFFCPVL VLLLSERVNE PSKLEGTFNK VLGFYAKIIC 480
  481 SRWTFALLII GSLVYWGFGI YGTLGIRAVL NTAKILPLET PIRKPNRIIE ETVWKEFYPV 540
  541 TVIVNSPVDI SNANALRAFD NLVHDFESME KCRGSEYTIS PIRDYQTYFY GVGAEDFDYE 600
  601 EETVKNTSHS LDFSKLTGFL ANPIYKHHKG GLKLNFSNPV PIRKVQLIFA YENVTSWDER 660
  661 IQIMQDWRTI ASSHVALNVS VWNVNAMFVD QMLSLKGLAI SNALVTLGCM AAVCVVFIRN 720
  721 PLSVGLATAS ILSISIGVTG YLCFWDLDLD PVTLCAVIVS IGMSVDFVAH VACHYQVRYK 780
  781 EFEEKGVLKR IEMKTPESRV VNSLSNVLWP MVQSASSTLL CVLPLGILQN YLPMVFVKTI 840
  841 LLVVIWGMFH GLVLLPCILA QFPLSVFNKT FADLLFGRTS SSSCSSESDS ETDTGDAQEM 900
  901 VPLAGTEKA