YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-26
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLRLISIG VLINFHFGNA ASQSTDERKL EAQLLKGYNS KVRPVKVEST VTQVAVYLNI  60
   61 AHVEKVDEHE QTALVHGHLM ASWTDEYLKW ERKATNISTL SIASSKLWQP ALQLYNSARG 120
  121 NSWSLYLTGL PAIVYNTGKV WSRGTFSFFV TCQFDFTNWP YDQQSCPIVI TDWVYGLGQV 180
  181 NLSDPATAAG YGKPTIRLSY DPIDETNKRH VGGWEVIDSW KKHCYWGPKG CLDAEPDGNP 240
  241 DWYWSLLEFG ITLKRHLPYF SLTIVMPMVS TSLMILLGFW IENFDFNVFL ITLNIALQAT 300
  301 YGSNILSRMP PGSGRTPKIV HLYSIGLLIS AFQVVLIVMS NFLRVRLPSH YEFDFGYDIT 360
  361 EIPKKFGLTR FFTTKGLSFD PQELLNPAQL TSEAEIQKEA STSIGISNPL AESGSDTDLL 420
  421 INLPKNSEAD LSERSETLGM PDSEKTQKES QKKMRKLEIQ LLHIKRFAFF FVIFVYLFAI 480
  481 LLVLAT

Type	Start	End	Confidence
Signal Peptide	1	20	0.56
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	256	0.61
Transmembrane Helix	257	281	0.87
Cytoplasmic	282	285	0.51
Transmembrane Helix	286	302	0.56
Non-Cytoplasmic	303	318	0.83
Transmembrane Helix	319	343	0.86
Cytoplasmic	344	461	0.98
Transmembrane Helix	462	485	0.90
Non-Cytoplasmic	486	486	0.98