YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-20
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	38	0.93
Non-Cytoplasmic	39	244	0.98
Transmembrane Helix	245	267	0.88
Cytoplasmic	268	279	0.72
Transmembrane Helix	280	300	0.93
Non-Cytoplasmic	301	307	0.77
Transmembrane Helix	308	330	0.90
Cytoplasmic	331	346	0.88
Transmembrane Helix	347	369	0.86
Non-Cytoplasmic	370	380	0.72
Transmembrane Helix	381	406	0.75
Cytoplasmic	407	470	0.80
Transmembrane Helix	471	491	0.82
Non-Cytoplasmic	492	670	0.60
Transmembrane Helix	671	694	0.86
Cytoplasmic	695	699	0.50
Transmembrane Helix	700	721	0.93
Non-Cytoplasmic	722	727	0.52
Transmembrane Helix	728	747	0.65
Cytoplasmic	748	780	0.76
Transmembrane Helix	781	802	0.86
Non-Cytoplasmic	803	813	0.62
Transmembrane Helix	814	837	0.91
Cytoplasmic	838	860	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLERFFDW YGQFVARKPF FFILIPSLLT ILSTYGFLSF HTQDDIWDIY APTNGLSRVE  60
   61 EAGIKRFEYA SGSHHHRMQI LVSKKNRGNI LTNEALGEVS QAHKFVADNI TAFDGTRHIA 120
  121 YKNLCGVYCN DSNAAVLAFL QATLNDTSRS SFKLTFPNAE ALQKKIFVGY SLGDLKIEKG 180
  181 YVTEAKMVVL HYMVDTSIPN GRALATDFEN KVRAFFASIS DLSHHIKYSV LSRTRELEEQ 240
  241 RAITITSLPF LGLTIVVLTC FMLVTLVRFP LYTSQHWQSI VGVLSPGMAL WTTTGLLWGI 300
  301 GYPFSNILTV VPFLVVTIGI DDAFLILAGW RQSTKGESLE VRLGQSVAIS GASVTVTSVT 360
  361 DVACFATGLF SNMPVVQLFC LYTTVALAID FIYQMTFFTA LVGIFVRKQV DIEKELVKNE 420
  421 PKIEKTKEEE GASSSSLASL LTFVPTISQE AHTRSILEVF IDFLHTPVAK LAVVLAFIGH 480
  481 ILICLALVSH VNTNFDMENL YLEDSPLTDI SRRMQNFVLG EAFVVNFGVY PMPDFDDEQI 540
  541 RLKFEEMVKS LETMPKYGAG KENTNLWIRE YSNAVAFWGE TEDFWHKEDM VNNYREYGMD 600
  601 EKYVTMTNDT NGDEIIDGFF FTITYRNFTN FLEVESFLED RRDILKNYST YFKVFSHHPF 660
  661 EKVPTESAAS APFNFISTSV SAVVLMSLLV LVFIMNFEAI ISVAVSIVSI CLGIVVYLHL 720
  721 WNVNLDAVSL ISMLMSIGFS VDYSAHVCYH YFAHVHEDEQ LWRSHNYAET RDRLLSTFRG 780
  781 VAWPVMQSGL STILGMFPLM FVRAYVVAVF WKTVILVGIL GMLHALILLP VIFILTHDIK 840
  841 LLFRRKRAVA PTPHSMELAS