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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7510080
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYHSTARPT IQPIGILHID EEDEYQQLRT LVERFWSLES SMIFENPLTS DEEYTNDFFQ  60
   61 RTTTRDEEGR YTCRWPFKYD IKNLPDNRYL AYHRLQSTLR RLQKDSVIVE QINRGFIEEV 120
  121 LGEFSETGNH VHYLSHHPVF KPSSTSTKIR IVYDASAKAN KNSKSLNEML HAGESLLPKL 180
  181 SEVLLRTRKP EILVSGDIEK AFLMVSLHEN DRDTCRFLWT PPDGSKPICY RFCRVPFGVK 240
  241 SSPFLLNATI KTHLETYNTQ MAQEILKNIY VDNKLLGTPW NIQSDILSIN IAPPIATALS 300
  301 KRRILQSVAS TYDLLGVVAP VVVRGKLFIQ KLWARPAEWD SELTESETQE WRQIEKECCG 360
  361 DPIQINRRYF STPTTEDHKF EIHVYGDASA TALGAVAYIR RIGPKDIETA FVTAKSTVKP 420
  421 LKKGLTIPQS ELLAIEKCAR LAHLLNPWIK WRATQQEIHL AGIGCVKLDS LRQMHISLTY 480
  481 LENRIRQMCS VEVVDWKSYA IMHCSGQDLL VYKIETSSCD HQAYKSGNQS KTTYMCQSRR 540
  541 HQTTVPDGFR VSKQEKHTSS HFGGTYGPHS PHDFAWKFAG KSWMCTSSLI NYFIARWKED 600
  601 YVQVLQSRNA IAHKQDHLTN HKQLQVGDVV MFKSDKNKMS WPLARVEEVG PRSAKLYAGH 660
  661 TGNFIERPFK SIYPLEVSFN KDEEPVNEST NTETPIPTNA ITKDNRTDMD EENQIVPPTR 720
  721 DDSSRSTTRS GKSYGKPQRV KYGGKPQRVK YSGKPQRVKY SWKPQRVKYG GKPQRVKYGG 780
  781 KPQRVKYSWK PQRVKYSGKP QRVEYGGKPQ RVKYGGKPQR VEYGGKPQRV KYGGKPQRVK 840
  841 YGGKPQRVKY GWKPQRVKYG GKPQRVKYGG KPQRVKYGWK PQRVKYSWKP QRVKYGGKPQ 900
  901 RVKYGWKPQR VKYSWKPQRV KYGGKPQRVK YGWKPQRVKY GWKPQRVKYS WKPQRVKYGG 960
  961 KPQRVKYGWK PQRVKYGWKP QRVKYGWKPQ RVKYGWKPQR VKYGWTPQRV KYGWKPQRVK1020
 1021 YGWKPQRVKY GGKPQRVKYG WKPQRVKYGW KPQRVKYGWK PQRVKYSWKP QRVKYGWKPQ1080
 1081 RVKYGWKPQR VKYGWKPQRV KYGWKPQRVK YGGKPQRVKY GVKYGGKPQR VKYGWKPQRV1140
 1141 KYGWKPQRVK YGGKPQRVKY GWKPQRVKYS WKPQRVKYGG KPQGVKYGWK PQRVKYSWKP1200
 1201 QRVKYGGKPQ RVKYGWKPQR VKYSWKPQRV KYGGKPQRVS ERHFKKRKMK PILLKLLLLL1260
 1261 HVIFDISFTI ISLGFYTPGW VFNLDDVFKT FHINDYNYMI SPLDFVGLCL FRQVSLLVAL1320
 1321 IIVRRGKAER LKKYMTIYDL FGILGYMIAV VKLLVFDETS GFLKSPGVFM SVGSAVFLTF1380
 1381 SLPFAIRKTL LGKKKEGAEY ERLTENTETA ANTNVENGTA STNGTASTAT PTAATSSTSR1440
 1441 SSSTDEEDND AVSKEEKEKR LPLLTHLWQI VKLCSVQWKW FSAAYVLLFV DCILNLIEPA1500
 1501 LYSQMMSTAI RMKSFDVLKR ACIVLAAVQF TEATVNTVRY ICMQYAERLT ARNIRVSLFR1560
 1561 AILHQDISFF DDNKTGQLMS RITKDSESIS NSLPVYIETT VNNSFMLFGS APIMFYYSWQ1620
 1621 LAISTFVTFP IILLTTKFYG LIVEKLSEKE NDATAVSNET VEEVLSAIRT VRSFAAEKIE1680
 1681 NMRYTRDTDA WFKISTKTVV FGTFFNYFWA TMWNIEDVII YLYGGYLTLN GRMEPDALLT1740
 1741 YIFYHWRLHS ALNAFSSLFS DVMKTIGSSR KVIHIMNRQP ELDYEFGTET PEIVGNIIFE1800
 1801 DVEFAYPTRK NANVLNKINL SIDPGKTIAL VGPSGNGKST LVSLIQQFYT PQSGRILIDG1860
 1861 TPIQNIDHLH YHTNIALVAQ EPTLFSGTVR ENILYGLENG TDEDMMRVAE MANVHEFVSK1920
 1921 MEKGYDTKCG EKGVQMSGGQ KQRIAIARAL IRDPRVLILD EATSALDSES EAMVQEALNR1980
 1981 CARERTVLVI AHRLSTVRSA DRIAVIEKGN VTEMGNHEEL MKNTEGLYYK LVSKQLDPLI2040
 2041 GTKKEEEKPP ATEFF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle