YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acc-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLIILVISI LISNAGSLLR SLEDDSNECM FNCPKRARNV SVPHTEKTCM GDDAIIAQIL  60
   61 DGYNKLDLPG GGHVVVSIEI WVQEVSKIIE ITSEFELDIY VTERWTDPSL AYSHLNPCKS 120
  121 NMSVDGATIL NKIWNPHACF VNSKLANIHE SPFKNIFLQI YSNGSIWHNY RIKLTGPCSS 180
  181 TLRTFPIDQQ RCMLFYESFT HNTDQVKMEW ITTVPPITIL KGNITLPDYV LVDFSSSSEL 240
  241 RLYPPGIFNE LIATFTFQRL YGFYILQVYV PAYISVFISW VSFTLGAEQI PSRTTVGVNS 300
  301 LLALTFQFGA VVNNLPKTSD VKAIDVWILS SMAFIFASLI ELAVVGYLSR DGQHGSIKCR 360
  361 CSWLCMNCKD WTALKIDQMS SIVFPVSFLA FNIWYWFIFL GKLLVRTI

Type	Start	End	Confidence
Signal Peptide	1	17	0.88
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	260	0.92
Transmembrane Helix	261	284	0.82
Cytoplasmic	285	294	0.64
Transmembrane Helix	295	312	0.65
Non-Cytoplasmic	313	325	0.40
Transmembrane Helix	326	348	0.89
Cytoplasmic	349	378	0.46
Transmembrane Helix	379	400	0.86
Non-Cytoplasmic	401	408	0.41