YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23965
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.96
Non-Cytoplasmic	42	52	0.72
Transmembrane Helix	53	72	0.85
Cytoplasmic	73	86	0.74
Transmembrane Helix	87	109	0.90
Non-Cytoplasmic	110	115	0.75
Transmembrane Helix	116	136	0.92
Cytoplasmic	137	169	0.93
Transmembrane Helix	170	194	0.83
Non-Cytoplasmic	195	213	0.91
Transmembrane Helix	214	233	0.93
Cytoplasmic	234	240	0.89
Transmembrane Helix	241	260	0.93
Non-Cytoplasmic	261	267	0.76
Transmembrane Helix	268	291	0.78
Cytoplasmic	292	307	0.76
Transmembrane Helix	308	331	0.80
Non-Cytoplasmic	332	338	0.89
Transmembrane Helix	339	361	0.93
Cytoplasmic	362	387	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAYAAALFF WGWLGDRLNP KLVVAAGMVG SAVTLTLFGA IPKWFNFYHA PYYIMTYVAF  60
   61 GLVQACGWPS EIAIMANWFG KGNRGFVMGV WAACQPVGNI FGSIFTAMVL PLGYQYTFVF 120
  121 NSVLIALGAI VVVMAIDSSP NEEHEDGVEA NSSEPHHNFH GEPISLFKAV LLPGVLAYCI 180
  181 CNACLKLVNY AFFFWLPLYL TDAYHWEESQ ADQLSIWYDF GGIIGSVLGG YITDKMGKRS 240
  241 PLIVAMLVCS IGSLYFYAHV GPHMFWNAVV MTTVGVTVSG PYNLIVGSIS IDLGSQPALA 300
  301 GNTQAMSTVS GLLDGTGSAG SAVGQLLIPI IQDDLGWKAV FYVFMLLNGF AILAILKRCI 360
  361 IDLKSLRKLR SGEESPLLND EAGDHED